Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0328 ATGTTGTTTTCTGACAAAGAAGGTTATATTTGCAGAAATGATGAACACAAGTCCGAAAAGAAACAAGTAGTGAAAAAGGAGAACAATAATTCTGTAAGAGGCAGAAGACTAAGAACTGGATTTTCAGATTCATTTTCAACCATTGACTTGGGAAGTTTAGATTTTGAAGAGGAACACCAATCTGAGAACTACTCTAGTCCTAGAAGTGTAGAATCTGGTAACCATTCTTCAAGGACAAGCACTTCTGATTCAGAGGGTCATCCAGATTTGACAGGTGCTGGAAATAATCAGTGGCATCAAGGTTTCTTTAAATTACTGAAGAAAGGATCACAAATGCACTTCCATATTCATCCACTTAAAAATGTTCAAAAGCTAACAAGGAGAAAGAGCAAAAGAATAAGGGAGGACTTGATTCCTTCTCTTAGTTCTCCTGCTTTGAAGTCATCTTTGGACAGTGAGTTTTGCTGCTTTAAATCTTCCTGGAAAAATTTCAGTCTTTCTGAGATTCAGGCTGCAACTAATGACTTCACCCATGATAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTACTTAGGCAAATTGGAAGATGGTAACTTTGTTGCCATTAAAAAGTTGACAAGAGGGAGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTCGGCATTATAGTGCATGTGGATCACCCGAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAGTTGTCTCCACATGGGAGTCTATCATCCATACTTTATGGACCTAGAGAGAAACTGGATTGGAGCTTAAGGTATAAGATTTCTCTAGGGACTGCTGAAGGCCTCCGCTATCTGCATGAAGAATGTCAAAGAAGGATCATTCATAAAGATATCAAGGCTTCTAATATATTGCTCTCAGAGGACTTTGAGCCTCAGATATCTGATTTTGGGCTTGCAAAGTGGTTGCCTGATCAATGGACTCACCATACTGTCTCCAAAGTGGAAGGCACCTTTGGTTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAGACTGATGTATATGCTTATGGTGTGCTATTATTGGAACTTATTACTGGAAGACAAGCTTTGGATAGCTCACAGAAAAGTCTAGTAATGTGGGCTAAACCTTTGTTATCTGCAAACAACATCAAAGAGCTTGTTGATCCAGTTTTGGCTGATGCTTATGATGAAGAGCAGATGAAACTTGTATTAAAGATACTAAGAGGTGAAGAAGAGAGCTTGATGATGATAAAGGGGCATCAGCGATCAAAACTTCAAAGGACATACTCAGTAGAACTTAATGATGCAGAAGAGTACAACTCAACCAAGTTTTTGAATGAGAGGGATAAATACATGGAGACTATTCTAGGATCAAGTAGCTCTATCAAAAAAGAAAGCAATGAAAACTAG 1449 0.3865 MLFSDKEGYICRNDEHKSEKKQVVKKENNNSVRGRRLRTGFSDSFSTIDLGSLDFEEEHQSENYSSPRSVESGNHSSRTSTSDSEGHPDLTGAGNNQWHQGFFKLLKKGSQMHFHIHPLKNVQKLTRRKSKRIREDLIPSLSSPALKSSLDSEFCCFKSSWKNFSLSEIQAATNDFTHDNLIGEGGYAEVYLGKLEDGNFVAIKKLTRGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLDWSLRYKISLGTAEGLRYLHEECQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSANNIKELVDPVLADAYDEEQMKLVLKILRGEEESLMMIKGHQRSKLQRTYSVELNDAEEYNSTKFLNERDKYMETILGSSSSIKKESNEN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0328 482 SUPERFAMILY Protein kinase-like (PK-like) 161 418 IPR011009 -
Lal3g0328 482 ProSitePatterns Protein kinases ATP-binding region signature. 182 205 IPR017441 GO:0005524
Lal3g0328 482 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 25 458 - -
Lal3g0328 482 SMART serkin_6 176 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0328 482 Pfam Protein kinase domain 177 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0328 482 Gene3D Transferase(Phosphotransferase) domain 1 253 451 - -
Lal3g0328 482 ProSiteProfiles Protein kinase domain profile. 176 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0328 482 MobiDBLite consensus disorder prediction 1 38 - -
Lal3g0328 482 MobiDBLite consensus disorder prediction 1 33 - -
Lal3g0328 482 MobiDBLite consensus disorder prediction 56 93 - -
Lal3g0328 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Lal3g0328 482 PANTHER OS08G0249100 PROTEIN 25 458 - -
Lal3g0328 482 Gene3D Phosphorylase Kinase; domain 1 140 250 - -
Lal3g0328 482 MobiDBLite consensus disorder prediction 65 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0328 Lal-Chr3 2130989 2133446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0328 147 419 Receptor kinase-like Gene Family AT1G53420 42.349 6.11e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lal3g0328 Pkinase 2.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0328 - - gmx:102670300 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1413 5 16752716 16759726 Lal3g0328 3 2130989 2133446 LSH
Lal3g0328 3 2130989 2133446 Lal11g0477 11 3700474 3712176 LSH