Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0323 ATGGCATCAAATGCTACCAGTGGTGGCAGTAAGGGAAAAAGGAATAAGAACAAATTGAGGGTTGATCCATCTTCATGGGCGCCGAACAAGAATGATCCTTCACCTCAACATGAAAGTACAGAACATGAATCCTCTACTGTGAAGCTTGAAATGAGCCCAGGTCAAGTGCAAGCAGCTGCTTCTGACTTGCTTAATGTTAACCAAGGTAATTCTGGTCGGTCGAAACTTGACTTTGCATTGACTAATGCTGTAGATGCATTGGAGTTCAGGCTTAACCAAAGGAAAGAGGGAGACGAGGCGGATGATCTCCCGGATTTTAACTGGAATGATCTAAGAGGAGCTGGAGGTGATCTCCCGAATTTTAACTGGAATGATCTAACAGAAGCCAAGTTGGAAGAACTTATCCTTACTGATTTGCACATCAGAATTAAGAGACTGATAAAAAAAATTGCTGCACTTAGCTCCTGCACTGAAGAAGCTGTTACTAAGGCCATGTTAAGGTTTTCCAATTGTTGTGGATGTAGTGATACTTTTTCTAATATATTTGGTAATACTTTAGCATTTCTTAGAAATGGCCAAGAGGTTGATCCGTCAAAAGAGCAGTGTTTTGAAGATTTAGTGCACCTTGAGAAGTATATCATGGCTGAATTGGTCTGCACTCTTAAAGAGGTTAGGCCATCCTTAAGTGTTAAAGATGCCTTGTGGCGTTTGTTAGTTTTTGACATGAATCTGTTTCATGCTTGTGCAATGGGCGTTGAGCCTTTATGCTGTTTACGATGCCATCAAACTTCTGATGGTTGTTCTTCTGTCCAAACTGAATCGCAATCGAAATTAAAAGCAAAAGGTCATGAATTGAATCTTCCTATTCCTTTTAAATCAGTTCCCTCAGGAAATTCTGGTGACAATTTAAAGAATTCTGAAACTCTTGGTGGACTCTCAGAGAAAGAGGGTGATTCTGTTGATAAATCACTTAGTACTGCTGCAACATCTCAATCTCACCGGATGGTTGAATTGTGTGGATGTCTTAGAAAGGTCCATTCCAGTTGCACTAAGAGGGACTACACTCTTCGGCATAAGTCATTCATTATCGAAAAAAGTAATCCGACACATGGGCCTAAAGGGTCTTCAAGAGTACGAAAAATGAGCAGCTTGAGTGGTTTAATCTTGGATAAAAATCTTAACTCTGTATTGGAAACTACTACTATAAACTTGAAGAGTGCACCATCATCAAATACAAGCAATGCTGCGGGACTTGATCGAAGTGAAGACAGGTCTTCCACAAGACCTATCCAGTGCAATAATGAGGAACCTGATAGTAATTGTGTGGCGATACCAAACAGCAAGTCTCTGTCAGAATGGATACCCCAAGAGAATAAGGATGAATTGATTATGAAGCTGATTCCAAAGGTTCAGGAGCTTCAAGATCAGATTAAGAAATGGACAGAGTGGGGTAATCAGAAGATTATGCAGGCTGCTCATCAGCTAAGCCAGGACAACACTCTGCGAAAGACCCTAAAGAAAGAACTAGATGAAAATGAACAACTTATGAAAGAGAGGAAATATCTAGAGGAGAGCAGCATGAGGAGGATTTCTGAGATGAAAAGTGCAATGGATAATGCGAAGGCCAAGCTGGGACAAGCCGATGCCACTGTCCGGAAACTTGAGGCACAGAATGCTTCTATCAGGAAAGAAATGGAGGCTGCTAAGTTAGGTGCATCCGAATCAGTGACGAGTTTTCAAGAGGCCGTAAAGAGGGAGAAGGATATACAAACTAAGATTCAGTCACAAGACAAGGAGAAATCCTTGTTTCAGGAAATGCTAGTGACTGAGAAACACAAATTCGCTCAGCTGCAACAGGAATTAAAGCAAGCAAAAGAAAAAAAGGTGCAAGCTGAGGTTTTATGGCGGCAGGCCAAAAAGGCAAAAGAAGAAGTTCTCCAGCTAGCCAGTTCTATAGGAAAAGAAAGAGAGAGAAATGAGGAGTCAACAAAATACAGGGAGGAGCAGATGAAACTGAAAGCAGAAAAGAGTCGGCAGAGTTATGAAGCTGATATAAAGAAATATGAAGAAGAAATTGCGGAACTTAGAAGGAAGGAGAACAATTCAAAAATTGCTGCACTAAGAAGGGGAATTGGTTATGATGAATCATGGAATACTTTTGTGGCAGAACTGGTTACAGATATGAATGACTTTTCTGTGTCGGGTAAGGTGAAACGCGAAAGGGAATGCGTTATGTGCTTACATAAGGAGATTTCTGTTGTATTTCTTCCATGTGCTCATCAGGTTGTTTGTGAAACATGCAATGAGCTCCTTGTGAAACAAGGCATGCAAGATTGTCCTTCTTGCAGGACTCCTATCCAGGAGCGTATATCTGTACGCCATGCCATAAAAGGCGAGTCTTATGTTTTTGGTTGA 2415 0.4108 MASNATSGGSKGKRNKNKLRVDPSSWAPNKNDPSPQHESTEHESSTVKLEMSPGQVQAAASDLLNVNQGNSGRSKLDFALTNAVDALEFRLNQRKEGDEADDLPDFNWNDLRGAGGDLPNFNWNDLTEAKLEELILTDLHIRIKRLIKKIAALSSCTEEAVTKAMLRFSNCCGCSDTFSNIFGNTLAFLRNGQEVDPSKEQCFEDLVHLEKYIMAELVCTLKEVRPSLSVKDALWRLLVFDMNLFHACAMGVEPLCCLRCHQTSDGCSSVQTESQSKLKAKGHELNLPIPFKSVPSGNSGDNLKNSETLGGLSEKEGDSVDKSLSTAATSQSHRMVELCGCLRKVHSSCTKRDYTLRHKSFIIEKSNPTHGPKGSSRVRKMSSLSGLILDKNLNSVLETTTINLKSAPSSNTSNAAGLDRSEDRSSTRPIQCNNEEPDSNCVAIPNSKSLSEWIPQENKDELIMKLIPKVQELQDQIKKWTEWGNQKIMQAAHQLSQDNTLRKTLKKELDENEQLMKERKYLEESSMRRISEMKSAMDNAKAKLGQADATVRKLEAQNASIRKEMEAAKLGASESVTSFQEAVKREKDIQTKIQSQDKEKSLFQEMLVTEKHKFAQLQQELKQAKEKKVQAEVLWRQAKKAKEEVLQLASSIGKERERNEESTKYREEQMKLKAEKSRQSYEADIKKYEEEIAELRRKENNSKIAALRRGIGYDESWNTFVAELVTDMNDFSVSGKVKRERECVMCLHKEISVVFLPCAHQVVCETCNELLVKQGMQDCPSCRTPIQERISVRHAIKGESYVFG 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0323 804 Coils Coil 671 705 - -
Lal3g0323 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 793 IPR013083 -
Lal3g0323 804 ProSiteProfiles Zinc finger RING-type profile. 743 783 IPR001841 -
Lal3g0323 804 MobiDBLite consensus disorder prediction 1 52 - -
Lal3g0323 804 PANTHER OS05G0141500 PROTEIN 425 795 - -
Lal3g0323 804 PANTHER OS05G0141500 PROTEIN 6 419 - -
Lal3g0323 804 Coils Coil 607 634 - -
Lal3g0323 804 Coils Coil 530 571 - -
Lal3g0323 804 MobiDBLite consensus disorder prediction 292 309 - -
Lal3g0323 804 Pfam Zinc finger, C3HC4 type (RING finger) 740 788 - -
Lal3g0323 804 Coils Coil 505 525 - -
Lal3g0323 804 MobiDBLite consensus disorder prediction 405 438 - -
Lal3g0323 804 SUPERFAMILY RING/U-box 742 791 - -
Lal3g0323 804 Pfam Family of unknown function (DUF6592) 158 250 IPR046527 -
Lal3g0323 804 MobiDBLite consensus disorder prediction 405 420 - -
Lal3g0323 804 MobiDBLite consensus disorder prediction 289 328 - -
Lal3g0323 804 PANTHER OS05G0141500 PROTEIN 6 419 IPR046934 -
Lal3g0323 804 PANTHER OS05G0141500 PROTEIN 425 795 IPR046934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0323 Lal-Chr3 2105368 2108291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0323 743 792 C3H Transcription Factor Family AT1G73950 44.000 1.47e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0323 - - lang:109345292 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1957 14 18689822 18694114 Lal3g0323 3 2105368 2108291 PCT
Lal7g1451 7 19349785 19354084 Lal3g0323 3 2105368 2108291 PCT
Lal19g1518 19 17487252 17491443 Lal3g0323 3 2105368 2108291 PCT
Lal3g0323 3 2105368 2108291 Lal14g1957 14 18689822 18694114 PCT
Lal3g0323 3 2105368 2108291 Lal7g1451 7 19349785 19354084 PCT
Lal3g0323 3 2105368 2108291 Lal19g1518 19 17487252 17491443 PCT