Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0317 ATGATAATGAAGGAGAACCCTGTAGGTACTGAACTGGCAATGAATAATGCCAATGTGGAGGAGGAAATAGATTTTTCCTGTGAGCCGTATATAGGGTTGGAATTTGATTCGTCAGATGATGCACTTAAGTTTTACACATCATATGCAAGTCGAACAGGATTTAAAGTTCGGATTGGTCAGCTGTATCGATCAAGAACTGATGGGTCGGTTTCTTCTCGAAGATTTGTGTGCTCGAAGGAGGGATTTCAGCTAAATTCAAGAACAGGTTGCTCAGCGTTCATAAGGGTACAAATAAATGCTTCTGGAAAGTGGGTTGTTGATCATTTCCATAAGGACCACAATCACAATCTTGATACCGAAGGGGAGAATTGCATTCCAACTTCACAGCAAAGGGGTGCTACAGTTATCAATTCTTTTGCTGAAGTGCCCCGCAGGCCAAGGAAAAAATTGATTGCAGAATCCAATAATGAACACTCTTCTCCCTTTGGAATTATTGATTTAAAGCGTCTGAGAAGGGAAGAATCGGAAGGACATCCTATAACTGAACCATATGTCGGACAGGAGTTTAATTTGCCTGATGAAGCCTACCAATTTTATCGTGCATATGCAGCATATGTGGGTTTTGGAGTTCGAATTGGTCAATTGTTCCGTTCTAAGAATGATGGGTGGATCACATCCCGCCGATTTGTGTGCTCAAAAGAGGGGTTCCAGCATCCATCAAGAGTAGGTTGTGGAGCTTATTTGAGGATTAAAAGACAACCATCAGGAAAATGGGTAGTGGACCGTCTAAGAAAAGATCATAATCATGACCTGGGCTCTGCAGGGGACGGTGGCACAAAAGGTCTTCCTGCTCCTAATATTTTGACTGAGGAGGTACATGCTGGGTCGGTAAATGGTGATTTTTTTAAGCTAGATAACTACCCTGTCACTAGAGAAGTTAGACAAAATCACATCAAAGGTGATTGGTACAGTGTGCTTTTAGAGTATTTCCAATCGAGACAAGCAGAAGATACTGGTTTCTTTTATGCTGTGGAAGTTGATAATGGTAATTGCATGAGCATATTTTGGGCTGATGGCAGATCTAGATATTCATGTAGTCAATTTGGTGATGTCCTTGTTATAGACACATCATACCGGAAAAGTGTCTATTTGGCACCATTCGCTACCTTTGTTGGAGTTAACCATCATAAGCAACCTGTGCTTCTTGGTTGTGCTCTAATTGCTGATGAATCCGAAGAATCTTTCACTTGGCTGTTTCAAACATGGCTGAGGGCTGCATCTGGCCGACAGCCTCTGTCAGTAATAGCTGATCAAGACATTGCAATCCAGAGTGCGATAGTAAAAGTCTTTCCAGGAACCTCTCATCGCTTTTCATTGTGGCAAGTTAAGGCAAAGGAACAAGAGAATGAGGGTCTTTTTGGTCACGAATTTACCGAAGATTATGGAAAGTGTGTTTACCTAAGTCAAACAGTTGAAGAATTTGACACAAAATGGAATGCCCTACTCAACAAATATGGATTGAAGAACAATGCTTGGCTAGAAGAAATGTATGAGAAGCGTGAATCCTGGGTTCCATTATATTTAAGGGGCATATTTTTTGCGGGCATACCCATGAATGAAAGCATTGAATCATTTTTTGGTGCATTTTTGAATGCCCAAACACCTCTCATGGAGTTCATTCCAAGGTATGAGAGAGGTCTTGAGCGACGCCGTGAGGAAGAAAGAAATGAGGATTTTAATACTTCTAATTTTCAACCTCTTTTGCAAACAAAAGAACCAGTAGAAGAACAATGTAGAAGGCTGTATACTCTTACCTTATTCAAAGTATTTCAGAATGAGCTTTTGCAGTGCTATAGTTATCTTGGGTTTAAGATTTATGAAGAAGGGCCCCTCAGAAGATACTTGGTACGTAAGGGTGGAAATGATATGGAGAAGCATATCATTACATTTAATGCATCCAATCTCGTCATTAGTTGTAGCTGTCAGATGTTCGAATATGAAGGTGTTCTTTGTAGACATGCTTTGAGGGTGTTGCAAATACTGGAGTTAAGAGAAGTTCCTTCTCGCTACATCTTACACCGATGGACAAGAAATGCCGAGGATGGTGTTTTTCCTGATACAGAGTCATGGAGTAGTTCTCAAGAACTCAGGAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATATGTAGATGCTGGTGCATCATCCATTGAAAAGTATAAACTTGCCTATGAGATTTTGCGGGAGGGTGGTAGAAAGCTATGTTGGCACAGGTGA 2283 0.4082 MIMKENPVGTELAMNNANVEEEIDFSCEPYIGLEFDSSDDALKFYTSYASRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAFIRVQINASGKWVVDHFHKDHNHNLDTEGENCIPTSQQRGATVINSFAEVPRRPRKKLIAESNNEHSSPFGIIDLKRLRREESEGHPITEPYVGQEFNLPDEAYQFYRAYAAYVGFGVRIGQLFRSKNDGWITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWVVDRLRKDHNHDLGSAGDGGTKGLPAPNILTEEVHAGSVNGDFFKLDNYPVTREVRQNHIKGDWYSVLLEYFQSRQAEDTGFFYAVEVDNGNCMSIFWADGRSRYSCSQFGDVLVIDTSYRKSVYLAPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAASGRQPLSVIADQDIAIQSAIVKVFPGTSHRFSLWQVKAKEQENEGLFGHEFTEDYGKCVYLSQTVEEFDTKWNALLNKYGLKNNAWLEEMYEKRESWVPLYLRGIFFAGIPMNESIESFFGAFLNAQTPLMEFIPRYERGLERRREEERNEDFNTSNFQPLLQTKEPVEEQCRRLYTLTLFKVFQNELLQCYSYLGFKIYEEGPLRRYLVRKGGNDMEKHIITFNASNLVISCSCQMFEYEGVLCRHALRVLQILELREVPSRYILHRWTRNAEDGVFPDTESWSSSQELRNLMLWSLRETASKYVDAGASSIEKYKLAYEILREGGRKLCWHR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0317 760 Pfam FAR1 DNA-binding domain 43 118 IPR004330 -
Lal3g0317 760 Pfam FAR1 DNA-binding domain 197 271 IPR004330 -
Lal3g0317 760 SMART 26again6 657 684 IPR006564 GO:0008270
Lal3g0317 760 Pfam SWIM zinc finger 642 679 IPR007527 GO:0008270
Lal3g0317 760 ProSiteProfiles Zinc finger SWIM-type profile. 644 682 IPR007527 GO:0008270
Lal3g0317 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 19 119 - -
Lal3g0317 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 148 756 - -
Lal3g0317 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 148 756 IPR031052 GO:0006355
Lal3g0317 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 119 IPR031052 GO:0006355
Lal3g0317 760 Pfam MULE transposase domain 371 463 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0317 Lal-Chr3 2051102 2053384 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal3g0317 MULE 2.8e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0317 - - lang:109345299 1485.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0317 3 2051102 2053384 Lal11g0474 11 3675550 3677829 LSH