Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0313 ATGGCTTCCATTGCTTTCAGAAACCATTCCTCTAACCACCTTCTCTTCTCTTTCCGTTTCATATCTGCTTTTTATCATTCTTTTTCTTCAAGCAATGCACCTCCATCATTGCCTCTTGTTTCTCTCCACAGATCCATGGCCACTTTCACTAGAACAAAGCCTCATCTTAATGTGGGCACCATTGGCCATGTGGATCATGGAAAAACCACACTAACTGCTGCAATTACAAAGGTGCTAGCTGATGAAGGTAAAGCCAAGGCAATTGCTTTTGAGGAGATTGACAAGGCTCCTGAGGAGAAGAAAAGAGGAATTACTATTGCCACTGCTCATGTAGAGTATGAGACAGCGAAAAGGCACTATGCTCATGTTGATTGCCCAGGACATGCAGATTATGTAAAGAACATGATAACTGGAGCTGCACAAATGGATGGTGGAATTCTTGTGGTTTCTGCTCCAGACGGGCCAATGCCTCAAACAAAGGAACATATACTGCTTGCGCGTCAGGTTGGTGTTCCATCACTAGTCTGCTTTCTAAATAAGGTTGATGCTGTTGATGACCCAGAGTTACTTGAACTGGTGGAAATGGAACTTCGTGAGTTGCTTAATTTCTACAAATTTCCCGGGGATGAGATCCCAATTGTACGAGGTTCGGCCCTGTCTGCCTTGCAGGGGACAAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGATGCTGTGGATGAATATATTACTGACCCTGTACGACAGCTTGACAAGCCATTCTTAATGCCGGTAGAGGATGTTTTCTCAATTCAGGGGCGAGGAACTGTTGTGACCGGTCGTGTTGAACAAGGCACCATCAAAGTTGGAGAGGAGGTAGAAGTATTGGGACTAACACAGGGTGGGCCTTTGAAGACAACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCACGGGCAAGCTGGTGATAATGTGGGACTTCTACTACGTGGTTTGAAGCGTGACGATGTACAGCGAGGAATGGTTGTCACCAAGCCTGGTGCATTGAAAACATATAAGAAATTTGAAGCAGAGATCTATGTCCTCTCAAAAGATGAAGGTGGTCGTCATACTGCATTTTTCTCTAATTATATGCCTCAGTTTTACCTGAGGACTGCAGATGTCACCGGGAAGGTGCAATTACCGGAGAACGTTAAGATGGTTATGCCCGGTGATAACGTGACTGCAACTTTTGAGTTGATGTCAGCTGTTCCTCTCGAAACAGGACAAAGATTTGCTTTGAGAGAGGGAGGCAGAACAGTTGGTGCAGGAGTTGTCTCCAAAGTGATTACCTAG 1326 0.4442 MASIAFRNHSSNHLLFSFRFISAFYHSFSSSNAPPSLPLVSLHRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYITDPVRQLDKPFLMPVEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQGGPLKTTVTGVEMFKKILDHGQAGDNVGLLLRGLKRDDVQRGMVVTKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYMPQFYLRTADVTGKVQLPENVKMVMPGDNVTATFELMSAVPLETGQRFALREGGRTVGAGVVSKVIT 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0313 441 SUPERFAMILY Translation proteins 250 346 IPR009000 -
Lal3g0313 441 TIGRFAM small_GTP: small GTP-binding protein domain 57 194 IPR005225 GO:0005525
Lal3g0313 441 PANTHER ELONGATION FACTOR TU-RELATED 30 440 - -
Lal3g0313 441 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 350 440 IPR009001 -
Lal3g0313 441 Hamap Elongation factor Tu [tuf]. 44 441 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lal3g0313 441 Pfam Elongation factor Tu GTP binding domain 53 245 IPR000795 GO:0003924|GO:0005525
Lal3g0313 441 Pfam Elongation factor Tu C-terminal domain 346 439 IPR004160 -
Lal3g0313 441 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 94 109 IPR031157 -
Lal3g0313 441 Gene3D Translation factors 251 381 - -
Lal3g0313 441 CDD EFTU_III 347 436 - -
Lal3g0313 441 PANTHER ELONGATION FACTOR TU 30 440 - -
Lal3g0313 441 Gene3D - 45 248 IPR027417 -
Lal3g0313 441 CDD EF_Tu 54 248 IPR041709 -
Lal3g0313 441 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 53 249 IPR000795 GO:0003924|GO:0005525
Lal3g0313 441 Pfam Elongation factor Tu domain 2 270 341 IPR004161 GO:0005525
Lal3g0313 441 CDD EFTU_II 256 344 IPR033720 -
Lal3g0313 441 Gene3D Translation factors 385 440 - -
Lal3g0313 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 271 IPR027417 -
Lal3g0313 441 TIGRFAM EF-Tu: translation elongation factor Tu 45 440 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lal3g0313 441 PRINTS GTP-binding elongation factor signature 57 70 IPR000795 GO:0003924|GO:0005525
Lal3g0313 441 PRINTS GTP-binding elongation factor signature 101 109 IPR000795 GO:0003924|GO:0005525
Lal3g0313 441 PRINTS GTP-binding elongation factor signature 121 131 IPR000795 GO:0003924|GO:0005525
Lal3g0313 441 PRINTS GTP-binding elongation factor signature 137 148 IPR000795 GO:0003924|GO:0005525
Lal3g0313 441 PRINTS GTP-binding elongation factor signature 174 183 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0313 Lal-Chr3 2023918 2028686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0313 51 439 Eukaryotic Initiation Factors Gene Family AT5G60390 29.885 7.22e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0313 K02358 - gmx:102667962 769.229