Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0311 ATGGTGAGGGTTAGTGTCTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGCGCGGCAAGCGCCAAGTCATGATTAGGCCTTCCTCGAAAGTGATCATAAAGTTCCTAATCGTGATGCAGAAGCATGGGTACATTGGAGAGTTTGAGTATGTTGATGACCACAGGTCTGGAAAAATTGTGGTTGAATTGAACGGTAGACTCAACAAATGTGGGGTTATTAGTCCCCGTTTTGATGTCGGTGTCAAGGAGATCGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGTTTGGATATATTGTGTTGACAACCTCTGCTGGCATCATGGATCATGAAGAGGCAAGGAGAAAGAATGTTGGTGGAAAAGTTCTGGGTTTCTTCTATTAG 393 0.4504 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0311 130 Pfam Ribosomal protein S8 7 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lal3g0311 130 SUPERFAMILY Ribosomal protein S8 4 130 IPR035987 GO:0003735|GO:0005840|GO:0006412
Lal3g0311 130 PANTHER BNAA02G06730D PROTEIN 1 130 - -
Lal3g0311 130 Gene3D - 70 130 - -
Lal3g0311 130 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lal3g0311 130 Gene3D - 1 69 - -
Lal3g0311 130 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lal3g0311 130 Hamap 30S ribosomal protein S8 [rpsH]. 2 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0311 Lal-Chr3 2017809 2019550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0311 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 99.231 3.20e-94 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0311 K02957 - sly:101247608 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1424 5 16834938 16836805 Lal3g0311 3 2017809 2019550 LSH
Lal3g0311 3 2017809 2019550 Lal11g0467 11 3629817 3632088 LSH
Lal14g1966 14 18738791 18740154 Lal3g0311 3 2017809 2019550 PCT
Lal7g1456 7 19377090 19378812 Lal3g0311 3 2017809 2019550 PCT
Lal3g0311 3 2017809 2019550 Lal14g1966 14 18738791 18740154 PCT
Lal3g0311 3 2017809 2019550 Lal7g1456 7 19377090 19378812 PCT