Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0299 ATGGCAACTTTTACATCTTCATCAATGTCACACATTCCAGTTCCACCCATTTCAGTTCCATCATCTTCTTCAGCTTTTGATGACTCTTATGAAGACTCCTGCAGTATATGTCTTGAACCCTTCAACATCAATGACCCATCCACTCTTACATGTTGCAAACACGAATATCACCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAGTGTCCAATATGTTCTCAATTGCTTGCTTTGAAAGACCCTTCCAGCCAAGAGCTTCTTGCTGCAGTGGAGGCTGAGAAACACTTGAGATCAAGAAACATATACTCATCTTCATTCACTAGCTCTCGTCTCCCCCTTGATCTTAATGATAACCATGATGATTCTTCCTCAGATGACTCTGGCTTTGACGAACAAATTATGCAACACCTAGTTGCTGCGGCTGAAAGTAGAGCTCATTTTGTTCATAGGCGGGAAAGGCGGAGATCGTCTGGAGTAGGTTCATCAGAGGTTCTTGTATTTAACTCTCCGGTGCATTTTTCTGGGATTCACCCAGTACTTTCAACCTCACCATCTGGGGGCAGTTCACCAATTTCTGGTGTGCCCTCTGCTGTTGACATTCAACCTCCAACATCTGTGTTCTCTCTTGTTAATGAGGTTGCGACAAATACTACTCTCCATAGTGATGCCCCTTTCAGACCCAGAGTTTTCTATAGCCAGACAGCACCTGAGAGTGCAAGGAGACTAAACACTTCTGAGATGTTCTCTGTCCCTGAGTCCTTCAAATCCAAGTTTTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCCAAAAGTACGCGTGGCCTTAAGGAGAAGTTACTTGCTCAAAATGCCTCAGTAAAAGAGCTGAGCAAAGGTGTTCAACGTGAGATGAATGCAGGCATAGCTAGTGTTACACGGATGATTGAACGCCTCGATCTTACCTCAAAACGACCCACTTCTCCTCTTATTCCTGTCCAGAATGAGGGAACTTCAGCGTTCCCTATAAAAGGGAAGTCTACTGAAGAGCGTGGAGATATGGTCCATGATGTTGGTTCGGATGCTCCCTCACTCAATTCTCGCATGGTTGCTAGTCATGTTGAAATTCCTCCACATGTTCAGTGGACAAGATGCCCTGAAGAGTTAACTGAGGGTGATGAATGTGACTATGCTGTCTCACTTGTTCAAGAAATGCAACAAATGACTTTGATAACCAATTTACTTGTTGGTATGTGTCATGCATGCATTGTTATAAATGATCTATCATATAGGAGTTCAATAAACATGTAA 1296 0.4313 MATFTSSSMSHIPVPPISVPSSSSAFDDSYEDSCSICLEPFNINDPSTLTCCKHEYHLHCILEWSQRSKECPICSQLLALKDPSSQELLAAVEAEKHLRSRNIYSSSFTSSRLPLDLNDNHDDSSSDDSGFDEQIMQHLVAAAESRAHFVHRRERRRSSGVGSSEVLVFNSPVHFSGIHPVLSTSPSGGSSPISGVPSAVDIQPPTSVFSLVNEVATNTTLHSDAPFRPRVFYSQTAPESARRLNTSEMFSVPESFKSKFSAASARYKESISKSTRGLKEKLLAQNASVKELSKGVQREMNAGIASVTRMIERLDLTSKRPTSPLIPVQNEGTSAFPIKGKSTEERGDMVHDVGSDAPSLNSRMVASHVEIPPHVQWTRCPEELTEGDECDYAVSLVQEMQQMTLITNLLVGMCHACIVINDLSYRSSINM 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0299 431 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 336 - -
Lal3g0299 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 336 - -
Lal3g0299 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 105 IPR013083 -
Lal3g0299 431 SUPERFAMILY RING/U-box 29 81 - -
Lal3g0299 431 SMART ring_2 34 74 IPR001841 -
Lal3g0299 431 MobiDBLite consensus disorder prediction 321 340 - -
Lal3g0299 431 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Lal3g0299 431 Pfam Ring finger domain 32 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0299 Lal-Chr3 1944858 1948409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0299 28 82 C3H Transcription Factor Family AT4G00335 45.455 1.25e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0299 K19043 - gmx:100775754 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1439 5 16971181 16974226 Lal3g0299 3 1944858 1948409 LSH