Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0288 ATGATTCAACAAGGAGGAGGTATAGCACCACCCAACATGGGTCAACAACCTTACGTCATCATGCCACATCAGCCTCAGGCTCCTCCCATGTGGCAACAACAACAACCGTCTCAGTCTGTTGCTCCGCCGCAACAACTCCCGTCTCAACCTCAAAGCGCCGATGAGGTCCGTACCCTATGGATCGGTGATTTGCAGTACTGGATGGATGAGAACTATTTATATCAATGCTTTGCTCACACCGGAGAGGTGGCTTCTGTGAAAGTCATTCGAAATAAGCAAACTAACCAATCAGAGGGCTATGGGTTTATTGAGTTCAATAGTCGTGCTGGTGCTGAGAGAGTACTTCAAACTTACAATGGAGCTATTATGCCCAATGGTGGGCAGCCCTTCAGGTTGAACTGGGCAACTTTCAGTGCGGGTGAGAGGCGTAATGATGACAGTCCCGACTACACCATATTTGTTGGTGACTTGGCTGCAGATGTCACCGACTATCTCCTAACAGAGACATTTAGGTCCCGTTTTAACTCGGTTAAGGGTGGAAAAGTTGTGATTGATAGGCTCACTGGCCGGACCAAGGGTTATGGTTTTGTGAGGTTTGCAGATGAAAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGAGGATTGGACCAGCTGCTAATAAAAACACAGGCACACCACAAAAAGCTTCATATCAGAATCCCCAAGGCCAAGACTCTCAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGAAATTTGGATCCTAACGTCACCGATGATTATCTGAGGCATGTTTTTGGCCAGTATGGAGAGTTAGTTCATGTGAAGATTCCATCAGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTCTGCAGAAGAGGCACTACGGGTTTTAAATGGAACACTGTTGGGTGGACAAAATGTTCGCCTTTCATGGGGCCGTAGTCCTTCAAACAAACAGACTCAGCCAGATGCAAACCAGTGGAATGGTGCCGGTGCTGGTGGGTATTACGGATATGCTCAGCAGCAAGGTTATGAAAATTATGGGTATGCTGCTCCTGCTCCTTCTGCCGCTGCACCACAGGATCCCAACATGTATGGCAGTTATCCTGCAGGGTATGCCAATTATCAACCACCACAACAACAGCAGCAAATAGGATATAGTTAA 1209 0.4698 MIQQGGGIAPPNMGQQPYVIMPHQPQAPPMWQQQQPSQSVAPPQQLPSQPQSADEVRTLWIGDLQYWMDENYLYQCFAHTGEVASVKVIRNKQTNQSEGYGFIEFNSRAGAERVLQTYNGAIMPNGGQPFRLNWATFSAGERRNDDSPDYTIFVGDLAADVTDYLLTETFRSRFNSVKGGKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPAANKNTGTPQKASYQNPQGQDSQNENDPNNTTIFVGNLDPNVTDDYLRHVFGQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQPDANQWNGAGAGGYYGYAQQQGYENYGYAAPAPSAAAPQDPNMYGSYPAGYANYQPPQQQQQIGYS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0288 402 CDD RRM3_NGR1_NAM8_like 256 327 - -
Lal3g0288 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 137 IPR000504 GO:0003723
Lal3g0288 402 CDD RRM1_SECp43_like 58 138 - -
Lal3g0288 402 SUPERFAMILY RNA-binding domain, RBD 243 353 IPR035979 GO:0003676
Lal3g0288 402 Gene3D - 18 144 IPR012677 -
Lal3g0288 402 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 11 399 - -
Lal3g0288 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 229 IPR000504 GO:0003723
Lal3g0288 402 Gene3D - 234 339 IPR012677 -
Lal3g0288 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 329 IPR000504 GO:0003723
Lal3g0288 402 CDD RRM2_SECp43_like 149 228 - -
Lal3g0288 402 Gene3D - 149 225 IPR012677 -
Lal3g0288 402 SUPERFAMILY RNA-binding domain, RBD 18 138 IPR035979 GO:0003676
Lal3g0288 402 MobiDBLite consensus disorder prediction 364 402 - -
Lal3g0288 402 MobiDBLite consensus disorder prediction 229 258 - -
Lal3g0288 402 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 11 399 - -
Lal3g0288 402 MobiDBLite consensus disorder prediction 1 54 - -
Lal3g0288 402 MobiDBLite consensus disorder prediction 220 258 - -
Lal3g0288 402 MobiDBLite consensus disorder prediction 388 402 - -
Lal3g0288 402 MobiDBLite consensus disorder prediction 27 54 - -
Lal3g0288 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 215 IPR000504 GO:0003723
Lal3g0288 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 322 IPR000504 GO:0003723
Lal3g0288 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 124 IPR000504 GO:0003723
Lal3g0288 402 SUPERFAMILY RNA-binding domain, RBD 144 246 IPR035979 GO:0003676
Lal3g0288 402 SMART rrm1_1 58 133 IPR000504 GO:0003723
Lal3g0288 402 SMART rrm1_1 258 325 IPR000504 GO:0003723
Lal3g0288 402 SMART rrm1_1 151 225 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0288 Lal-Chr3 1885397 1889699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0288 59 339 Eukaryotic Initiation Factors Gene Family AT4G34110 24.306 4.54e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0288 - - aprc:113864230 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1445 5 17005679 17009964 Lal3g0288 3 1885397 1889699 LSH
Lal3g0288 3 1885397 1889699 Lal11g0446 11 3382231 3386385 LSH
Lal14g1975 14 18796734 18800004 Lal3g0288 3 1885397 1889699 PCT