Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0280 ATGTCTTGCTCCAACCTCACCATGTTGGTGTCCTCTAAACCTTCTTTATCTGATGCCTCTAACCTCTCCTTCCGTTCTGTCCTCAACCCTTTTCAGCTTCCTTCACAAAACTCATCGTCGTCCGCGACTACCCCTTCGCGGTCTTTGATTTCCCCTCTTCAGTGTGGCCTCAGAGAGCTCAGGACTCGTATTGATTCTGTCAAGAATACTCAAAAGATCACTGAGGCAATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTCTCACAGACACTTGTTGAAGTCCTTTACAACATCAATGAGCAGCTCCAAACCGATGATGTCGATGTACCTCTCACAAAGGCTAGGCCTGTGAAGAAGGTTGCCCTTGTTGTTTGCACGGGTGATAGAGGTCTTTGTGGTGGTTACAACAATGCAATCTTGAAAAAAGCTGAGGCCAGAATAGCTGAGTTGAAGACTCTTGGTCTTGATTACACTGTTATCAGTGTAGGTAAAAAGGGCAATACTTATTTCCTTCGTAGGCCTTATATTCCGGTCGATAAGTTTCTTGAAGGTGGCACACTTCCAACCGCGAAAGAGGCTCAAACAATTGCTGATGATACTTTTTCGCTCTTCGTGAGTGAAGAGGTTGATAAAGTTGAGCTTTTGTACACAAAATTTGTGTCACTAGTTAAATCACAGCCTGTGATTCATACCTTGCTTCCACTCTCACCAAAAGGAGAGATTTGTGATATTAATGGTGTTTGCGTTGACGCTGCTGATGATGAGTTTTTCAGGTTAACAACCAAGGAAGGAAAGTTAACTGTGGAAAGAGATGCTGTGAGGACTAAGACTGCAGATTTCTCACCTATTTTGCAGTTTGAGCAGGATCCAGTTCAGATCCTTGATGCACTTTTGCCTCTTTATTTGAACAGCCAGATTCTGAGGGCATTGCAGGAATCACTTGCAAGTGAGTTAGCTGCTAGAATGAGTGCTATGAGCAATGCAAGTGAAAATGCTAGTGAGTTGAAGAAGAATTTATCCACTGTTTACAATCGCCAACGTCAGGCTAAGATCACAGGTGAAATTCTGGAAATTGTAGCTGGTGCCAATGCACTAGAATAG 1134 0.4356 MSCSNLTMLVSSKPSLSDASNLSFRSVLNPFQLPSQNSSSSATTPSRSLISPLQCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSQTLVEVLYNINEQLQTDDVDVPLTKARPVKKVALVVCTGDRGLCGGYNNAILKKAEARIAELKTLGLDYTVISVGKKGNTYFLRRPYIPVDKFLEGGTLPTAKEAQTIADDTFSLFVSEEVDKVELLYTKFVSLVKSQPVIHTLLPLSPKGEICDINGVCVDAADDEFFRLTTKEGKLTVERDAVRTKTADFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNASENASELKKNLSTVYNRQRQAKITGEILEIVAGANALE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0280 377 PRINTS ATP synthase gamma subunit signature 128 147 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal3g0280 377 PRINTS ATP synthase gamma subunit signature 221 238 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal3g0280 377 PRINTS ATP synthase gamma subunit signature 323 342 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal3g0280 377 PRINTS ATP synthase gamma subunit signature 354 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal3g0280 377 Pfam ATP synthase 57 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal3g0280 377 ProSitePatterns ATP synthase gamma subunit signature. 362 375 IPR023632 -
Lal3g0280 377 Gene3D - 124 247 - -
Lal3g0280 377 Gene3D ATP synthase, gamma subunit, helix hairpin domain 275 376 - -
Lal3g0280 377 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 123 - -
Lal3g0280 377 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 56 376 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lal3g0280 377 CDD F1-ATPase_gamma 57 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal3g0280 377 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 376 - -
Lal3g0280 377 PANTHER ATP SYNTHASE GAMMA CHAIN 1 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal3g0280 377 Coils Coil 336 356 - -
Lal3g0280 377 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 56 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal3g0280 377 Hamap ATP synthase gamma chain [atpG]. 54 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0280 Lal-Chr3 1831104 1832237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0280 30 376 Primary Pumps ATPases AT1G15700 69.540 1.32e-173 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0280 K02115 - gmx:100037480 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0280 3 1831104 1832237 Lal3g0280 3 1831104 1832237 ECH
Lal3g0280 3 1831104 1832237 Lal11g0441 11 3325457 3326590 LSH