Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0268 ATGGAGGGTGGCAGTTCAAATGGCACTTCTTGTTTGTTACCTTTTGGAGAGAACAGTGGTGGGCTATATCCAATGATGATGGTGCCTTTAGTGACTTCTCATCATGCTGGTCATCATCAAATAAATCCTCATAATCTTAATCATAATAGTAGTAACAATAATACTGATAGTACTATTAATGCTAACACTAACTGTCTCTTCCTTCCTATGCCTTCTTCTTCCACTAATGATCATCATCACCACCCAAACAGCAACAACAGTGGAGGAAACCCTTCTATCATGCTTGAGAATAACCACAACACTAGTGCCAACAACAACAGCAACACTGGGATAGGTTATTATTTCATGGAGAGTGACAACCACCACCACCACCACAACAACAACAACAACAACAACAACAACAACAATGGAAGCTCCTCCTCCTCCTCTTCTTCTGTCAAAGCCAAAATCATGGCCCATCCTCATTATCACCGTCTCTTGGCAGCCTACGTCAGTTGTCAAAAGGTTGGAGCACCACCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCGGCAGTGGCAATAGCAGGAGACTCAGGTGGATCAGCATGTCTAGGTGAAGATCCAGCACTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGACCAAGTATGAACAAGAACTTTCCAAACCCTTGAAGGAAGCCATGCTCTTCCTTCAAAGGTTGGAGTGCCAGTTCAAAAATCTCACTATTTCCTCCTCTGACCTTGGTGATAATCCCCCTCTCTCTGGGTGTAATGAAGGTAGAGAAAGGAATGGATCATGTGAAGAAGATGTTGATGTAGAAAACATAGTAGATCCAGAGATAGAGGAAAATGAATTGAAGGGTAAGCTTTTGCGTAAGTATAGTGGATACTTGGGAAGTTTGAAGCAAGAATTCATGAAGAAGAGGAAAAAAGGAAAGCTACCTAAAGAAGCAAGGTTACAATTACTTCATTGGTGGACCACACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCTCTGGCAGAATCAACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGACATTGGAAACCTTCAGATGACATGCCGTTTTATTCTAATATGGTGGATCCAAATCATCCACAATATTACATGGATAATAATGTTCTTAACCATCCATTTCCTATGGATCTCTTCAACACAATGCTCTAA 1230 0.4163 MEGGSSNGTSCLLPFGENSGGLYPMMMVPLVTSHHAGHHQINPHNLNHNSSNNNTDSTINANTNCLFLPMPSSSTNDHHHHPNSNNSGGNPSIMLENNHNTSANNNSNTGIGYYFMESDNHHHHHNNNNNNNNNNNGSSSSSSSSVKAKIMAHPHYHRLLAAYVSCQKVGAPPEVVARLEEACASAVAIAGDSGGSACLGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRLECQFKNLTISSSDLGDNPPLSGCNEGRERNGSCEEDVDVENIVDPEIEENELKGKLLRKYSGYLGSLKQEFMKKRKKGKLPKEARLQLLHWWTTHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSDDMPFYSNMVDPNHPQYYMDNNVLNHPFPMDLFNTML 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0268 409 SUPERFAMILY Homeodomain-like 310 381 IPR009057 -
Lal3g0268 409 SMART HOX_1 310 375 IPR001356 GO:0003677
Lal3g0268 409 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 398 - -
Lal3g0268 409 MobiDBLite consensus disorder prediction 36 148 - -
Lal3g0268 409 MobiDBLite consensus disorder prediction 38 114 - -
Lal3g0268 409 SMART ELK_2 288 309 IPR005539 GO:0003677
Lal3g0268 409 ProSitePatterns 'Homeobox' domain signature. 346 369 IPR017970 GO:0000981|GO:0006355
Lal3g0268 409 MobiDBLite consensus disorder prediction 127 148 - -
Lal3g0268 409 Pfam Homeobox KN domain 328 367 IPR008422 GO:0003677|GO:0006355
Lal3g0268 409 ProSiteProfiles 'Homeobox' domain profile. 308 371 IPR001356 GO:0003677
Lal3g0268 409 PANTHER - 1 398 - -
Lal3g0268 409 Pfam KNOX2 domain 199 245 IPR005541 GO:0003677|GO:0005634
Lal3g0268 409 CDD homeodomain 334 372 IPR001356 GO:0003677
Lal3g0268 409 Pfam ELK domain 288 309 IPR005539 GO:0003677
Lal3g0268 409 SMART KNOX1_2 144 188 IPR005540 GO:0003677|GO:0005634
Lal3g0268 409 ProSiteProfiles ELK domain profile. 288 308 IPR005539 GO:0003677
Lal3g0268 409 Gene3D - 313 375 - -
Lal3g0268 409 Pfam KNOX1 domain 146 184 IPR005540 GO:0003677|GO:0005634
Lal3g0268 409 SMART KNOX2_2 195 246 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0268 Lal-Chr3 1761044 1768692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0268 146 409 Homeobox Transcription Factor Family AT1G62360 73.308 6.93e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal3g0268 KNOX2 6.1e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0268 3 1761044 1768692 Lal11g0415 11 3113533 3120717 LSH