Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0262 ATGGCTAAGAATAAGGGAGAGCTTACATACATAGAAGATGACTCAAAGAGAAAGACCACATGCAAGAAAAGGAAGGCTAGTCTGGTAAAAAAGATGAATGAGCTTACCACGCTGTGTGGAATTGAAGCGTGCGCTATTATATATGATCCTAATGAATCTCAACCAGAGGTTTGGCCTTCACACCCAGAAGTTCAAAGGCTGATCAGCAAGCTGATGGAGATGCCTGAGATGGAACAAAAAAAGTATATGTTTAATCATGAGAGCTTTTTATCTAAGAATTTGAATAAGGCCCGTGATCAACTGAAGAGAGTTAGGGATGAAAATAAGAGGATGGAAATGGAGCTTTTCATGTTCCAATGTCTGAATGTTGGGTGTATTATTAACACTTCCAACACGGTTGATACAAATTATCTCTTGTTTGTGATAAATCAGACCATCAAAGATATTCAATGGAAAGAAAGTAGGCACCAACGCCAACATGGAACAGTGGTAGTGGCTGCAAGTACAGAAGAACCTTTGAATGAAGAGGTTGCAAATGTGCATGAGATGGAACAAGCCAATATGGGTGCTATGCAATTGCAGGATTGGTCTTCTGATTCAACCAATGATGGAGGGAATATGATGCTTCCATTTGGAGATAATAGTAATTTCTCAAGTGGCTTTTGGCCTAGTCCTTCCTTCCCTTAA 687 0.3974 MAKNKGELTYIEDDSKRKTTCKKRKASLVKKMNELTTLCGIEACAIIYDPNESQPEVWPSHPEVQRLISKLMEMPEMEQKKYMFNHESFLSKNLNKARDQLKRVRDENKRMEMELFMFQCLNVGCIINTSNTVDTNYLLFVINQTIKDIQWKESRHQRQHGTVVVAASTEEPLNEEVANVHEMEQANMGAMQLQDWSSDSTNDGGNMMLPFGDNSNFSSGFWPSPSFP 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0262 228 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lal3g0262 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal3g0262 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lal3g0262 228 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal3g0262 228 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Lal3g0262 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal3g0262 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal3g0262 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal3g0262 228 Coils Coil 87 114 - -
Lal3g0262 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 - -
Lal3g0262 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 197 - -
Lal3g0262 228 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0262 Lal-Chr3 1712023 1712709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0262 1 168 Type I MADS-box Gene Family AT5G48670 45.143 2.11e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal3g0262 SRF-TF 4.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0262 - - lang:109344582 370.548