Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0261 ATGGCCATTCTTCAACGCCTATGGCGTTTACGTTCATTCCAAACCCTAACTTCTCATTCCTCACTTTCACGCACTCTTCCTCGTTCTTCCAATCACAATTCTGCACCTTCTTGTTCAACCGCTTCTCAAGTTTCAAGTTCCAGAATTGTGCGTGAGGCTCAGGGATCATTTAAACATTCGATGCTTCCAGCTTTATTAGCTGTTACTTTTGGATTTGGATTAGTGGAAACGGCTTATGCAGATGATAGTGCTAATAAAACCGAAGATGTGGAATCAATTGCTGTTAAAGAACGATACCGAATTGAGGAATTGCTTAGAAGCAGAGGAATTCGATATGGTTCTTATCCTCGCTTCACTGTTGCTGTTAAAGGCCAAAAGGTCAGTGTAAAGTTTCAAATTCCTCCTGCATGTGAAATCTCACAACTTATTGTGAATCTGACTGCAAATCTTGGACTGAAAGCTGAAGGGAACGGTGGTGGTTCAGATATGTCACTGCGTGCTTGGGATAGTACAGTTGCTTGGCAACTTACTCTTACTCATCCATCAAAGCAAAAACATATTCAAGAGAATGATCCATCTTTCACAGATATAAATGCACATGATGGAGATCTATGTGTGCTCATATTTCATTCCCTCATTGGCTCAGATAAAGCTGAAATTGAATTTATTAAAGAAGGGAGCTTGAGTCCTGAAGAGCTTGATGCTTTTGTCTCTATTTTACAATTAGCTGGTAACAAGACGACACAAAGAAACACCCTGGAAAAAAAGCCAAGGGAAGAGAACGAACAGGTGCCATCTGCAGATGTCTCTATTTCTAGTCTTGAGGCCATGGGAGTGAGAATTTATGGCCTCGATGAACCCATAGGTATATCAAACGGTGAAATATCGTGGGACAACATTGCTGGGTATGAGCATCAAAAGCGAGTAATTGAAGATACTATACTATTGGCTCTGCATAGCCCTGAAGTATATGATGATATTGCCCGAGAGACTCGTCATAAATTTGAGTCAAACCGGCCTCGAGCTGTGCTTTTTGAAGGTCCACCAGGTACAGGGAAAACTTCGTGTGCTCGTGTTATTGCTAATCAGGCGGTATGCTGCTTTCAAATCTATTACAGCTGTTCTCTTCATGGCCTTATTATTGCGCTGGTTTCTGAATATCCTGCCTGCCCTAATCCAAGGAACAAAAGCATAGGTAGTAGTGGAGGTTGTTTGCCAGCAGGGATTTTTAGGCAAGAGAAAGGGGAGGGGGTTGAACCTCAGATCTCTGCCTTTGGTGGGGGTGTCCCGTTGCTGTATGTTCCACTTGAGATAGTAATGTCTGAGTACTATGGCAAAAGTGAACGCCTTCTCGGAAAGGTTTTTTCTCTTGCAAATGGTCTTCCTAATGGCGCTATTATATTTCTGGATGAGGTTGATTCTTTTGCTGCTGCTCGCGATAGTGAAATGCATGAAGCTACACGAAGAATTTTGTCAGTATTACTGCGGCAGATAGATGGGTTTGAGCAGGATAAGAAAGTGGTTGTGATTGCTGCTACAAATAGAAAAGAAGATCTTGATCCTGCATTAATCAGTCGTTTTGATACTATAGTGGCGTTTGGCTTACCCGATCATCACAATCGCCAGGAAATAGCATCCAAATATGCAAAACACCTCACCAAACCTGAACTAGATGAACTTGCAAGTGTTACAGAAAATATGTCTGGAAGAGACATTCGAGATGTTTGTTTGCAAGCGGAACGGTCCTGGGCATCAAAGATAATTAGAGGACAGGTATCTAAAGATGGGGAACGAGGGAAACTTCCACCGTTGCAAGAGTATATAGTTTGCGCTACTAATAGACTCGAATCTCTGCGTAGCACAGCTGAAGACAGGAAAAAACGTAGTTCTTCTAGACAGAGGACCATAACTGGTTGA 1917 0.4231 MAILQRLWRLRSFQTLTSHSSLSRTLPRSSNHNSAPSCSTASQVSSSRIVREAQGSFKHSMLPALLAVTFGFGLVETAYADDSANKTEDVESIAVKERYRIEELLRSRGIRYGSYPRFTVAVKGQKVSVKFQIPPACEISQLIVNLTANLGLKAEGNGGGSDMSLRAWDSTVAWQLTLTHPSKQKHIQENDPSFTDINAHDGDLCVLIFHSLIGSDKAEIEFIKEGSLSPEELDAFVSILQLAGNKTTQRNTLEKKPREENEQVPSADVSISSLEAMGVRIYGLDEPIGISNGEISWDNIAGYEHQKRVIEDTILLALHSPEVYDDIARETRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAVCCFQIYYSCSLHGLIIALVSEYPACPNPRNKSIGSSGGCLPAGIFRQEKGEGVEPQISAFGGGVPLLYVPLEIVMSEYYGKSERLLGKVFSLANGLPNGAIIFLDEVDSFAAARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTIVAFGLPDHHNRQEIASKYAKHLTKPELDELASVTENMSGRDIRDVCLQAERSWASKIIRGQVSKDGERGKLPPLQEYIVCATNRLESLRSTAEDRKKRSSSRQRTITG 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0261 638 SMART AAA_5 339 537 IPR003593 -
Lal3g0261 638 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 46 364 - -
Lal3g0261 638 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 428 620 - -
Lal3g0261 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 597 IPR027417 -
Lal3g0261 638 MobiDBLite consensus disorder prediction 248 267 - -
Lal3g0261 638 CDD AAA 325 535 - -
Lal3g0261 638 Pfam ATPase family associated with various cellular activities (AAA) 343 534 IPR003959 GO:0005524|GO:0016887
Lal3g0261 638 Gene3D - 294 368 IPR027417 -
Lal3g0261 638 Gene3D - 438 535 IPR027417 -
Lal3g0261 638 ProSitePatterns AAA-protein family signature. 507 526 IPR003960 GO:0005524|GO:0016887
Lal3g0261 638 MobiDBLite consensus disorder prediction 22 41 - -
Lal3g0261 638 Gene3D - 536 595 - -
Lal3g0261 638 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 428 620 - -
Lal3g0261 638 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 46 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0261 Lal-Chr3 1700660 1709496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0261 428 579 Calmodulin-binding Proteins AT3G56690 33.962 7.23e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0261 - - gmx:100803362 704.131