Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0258 ATGAGTCAACTCAGGACGAGGCAGAGGGAGGAACCAACCACTATTCTTAGTTTGTTAACAGATCAAATGGACGGCGTTGATGGAGGGACACGCAGGAGACGTAGTTTGAAGGAACGGTTAGGATTCATCGGCATGGGTTGTTGTGGTGCCACGTGGGTTTTCCGTTCAACAAACATAACGGCCACTAACGGTGAAGAACAGCAACAACAACAGCATGGGTTAGTGGGTCAAGATCCGGAATTGGGTCGACCCGAATGTGTGGATCCGGTTGCGTCGGGTTCCTCTTCGGGGATGAATCTTGCGGCGGCGTTGGCGGCGGAGAGGCAGATACGAGGGCCGCATGAAGGAGAGAGGGAGGCAGGGACGCCGTGGAGAGTGTCGCTGATGAGGCTGCTGGAGGAGACGCAGGAGAAAGAGAGAAGAGCAACTGCGGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGAAGGAATAAAGGTGCAGCTTTTATTCCATGTGGACACACTTTTTGTAGAGTGTGTTCCAGGGAATTGTGGCTCAATCGAGGGTCTTGCCCACTTTGTAATCGTTCCATACTCCAGATTCTAGATATTTTCTAA 600 0.5217 MSQLRTRQREEPTTILSLLTDQMDGVDGGTRRRRSLKERLGFIGMGCCGATWVFRSTNITATNGEEQQQQQHGLVGQDPELGRPECVDPVASGSSSGMNLAAALAAERQIRGPHEGEREAGTPWRVSLMRLLEETQEKERRATAVGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILQILDIF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0258 199 MobiDBLite consensus disorder prediction 63 86 - -
Lal3g0258 199 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Lal3g0258 199 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Lal3g0258 199 CDD RING-HC 151 188 - -
Lal3g0258 199 SMART ring_2 151 188 IPR001841 -
Lal3g0258 199 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 199 - -
Lal3g0258 199 SUPERFAMILY RING/U-box 141 195 - -
Lal3g0258 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 199 IPR013083 -
Lal3g0258 199 PANTHER OS01G0917900 PROTEIN 13 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0258 Lal-Chr3 1681950 1682549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0258 15 199 C3H Transcription Factor Family AT4G22250 54.634 2.16e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0258 - - gmx:100804292 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1499 5 17529589 17530215 Lal3g0258 3 1681950 1682549 LSH