Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0240 ATGTCTGTATTCGATACATACAACGTTGATTTTTTTCATCAATGCAATCACTCCTCAAAGCGCAAATTCGATGATTGTATTCCCATTTTCGACGAAGAAGACGACGACTGTGCCGTCGATTTCCAATTCAGGATTAAGAAAGACGAACTAAAAGCAGTGAATTCCACCTCCAACGCCGCAGCGATGTCCACCGAGGTTCTTGCTAGGGTTTCCGACGCGCGATTGGCGCCGTTACACGCTTGCGCCGCTTCAAACTCCGAGTCGACTCGGTATAACTCGCGGTTACAGTTCTTTGTCAGAATGATTTCCAACACCGTTGTGATGCATGCGTGTCCGCAAGACAGTGTTAGATCGATCCATGAGCGAATCGAAATGATGACTGGAATACCGATGGAGGAGCAGTGTTTGATATACAAAGGGAAACATCTTCGGTGGGAGCAGACTCTGTACGAATGCGCGATTGAGAGCGACGCGAATATTCAAATGATTGGTCGTTTGAGAAGCACGTTGCACCCGAAAGGTTGGCAAATAATAGACGACATGATTTCACTGATTTTGCGTCTATGCAGAGGAGAAATGGTTCACGATTCTCTCAAAATCATCAATGATTTGATGACTAGTTATTTGAACCCGACTTTCAAGAAAATCAACGATCCTATGAATACCGAAAGCGAACTTATTAATTCGTATTTCAACATTTTCTTATCATCCAATGTTCCTGTATTCTTGGTTATGCTCTATATTTCACCCTGGCAAGGTAACAAGGAACTTGCTGATTTGTCTATTAGGCATTTCTTGAGTTCATGTAAAACTATCATCAATAAAGGATTGTATTGTCTGCGTGCTCGTTTGGTCTTGGAATTGTGTAAGGTTCTCAAGAGAGTAGGGAGTGATGATCCTCTGTACATGTTAAGTCGAAGTACTTTCATGTCATTGTTGGAGACTGCTGCTGTTTCATATTGTTCTGTGAATGGTGAAGGGAATATCTTGCTTCAAGATATTTCACCCTTTGTTCGTGAGCTTGTGGATAAATTGTTGAGGGATTTGGATTTGAGTAAAGCAGTCCCCCTCTGTGTGGGGCCATTGATCAATGATGTGAGGGATTTTACTGCATTCTTGCTCCCTATGAGGAAGGGAATCAAAGAGCTGCAAACAGTGAAGGGTTCAAGCGAAATCAAAGAGCTGCATACTTTGAACGGTTCTATAATTGATGAAAAACTCCACGAAGAGCTATTGCGTGCATCACTAGAGGCTGATAACCTTCATCTTATATTTATTCAGCTGTTGAAAAAAATGGGTGAGTGCCTTCGCAGCATGGACGAATGCTTGGCTAACAAGGAACTCGGGGATTTTATCTCTTCGGCATGGTCTCAGTATCTTTCCATCTTGAAGGAGCTGTATCAAATCACTAAGCTCTATGATGGTACTGAAGAAATGTTTTGGAGAGTACTGATGCAGCGAAGACGTATGGTGTGTCTACTAATTGTTAAATTTGCTAAGAGAACCGATGACCATAATTGGATTCTTGATCACAAAGCTTTGACCGATTTTGAGTCTCGGAGACATCTGGTGTTGATGCTTTTCCCTGGTGTAAGAGAAGACTATGTGGAGCTGCATGAAATGCTTATTGACAGGTCTCAGTTATTTGCTGAGTCTTTTAACTACATAAAACATGCAGAGGCTGCATCTCTTCGTGCTGGCCTATTTATGGAATTCAAAAACGAGGAAGCTACCGGACCAGGCGTACTGAGGGAGTGGTTTTTTTTGGTTTGTCATGCAATATTTAATCCGCAAAATGTTCTCTTTTTGGCATGCCCAAATGACAGACGGAGATTTTTCCCTAATCCTGCATCCAAGGTCGATCCTATGCACCTAGAGTACTTCAAGTTCTCTGGTCGTGTTATTGCATTAGCTCTGAAGCATAGAGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCATGCAATTGATGGGAAAGCGTATTACTTTAGAAGATATACAGGATGCAGATCCTTACTTGTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCGGATGCATTAGGACTAACCTTTGTTAGAGAGGTGGAGGAATTAGGATACAGGAAAGTGGTTGAGCTTTGCCGTGGAGGGGAAAGCCTTGTAGTCAATAGTAAGAACAGGGAGAAGTACGTTAATCTTCTTATACAGAGCCGTTTTCAAACATCCATATTTCAGCAGGTATCATATTTTGCCAAGGGTTTTGCTGATATACTGTCCGACTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGCTCAAAGATCTTGACTGCATGTTGCATGGGAGTGAAAAAACCATTTCTGTTGAGGAATGGAAGGCTCATACAGAGTATAGTGGCTATAAAGAGAGTGACCATCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCAGAACAAAGGAATGTTCTCCTCTTCTTTTGGATATCTGTGAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGGCTCTCGTCTATACATTTATAAGTCCCTGGAGCCAGATGATCGGCTCCCTTCGTCTCACACATGCTTTTATAGGCTGTGTTTCCCAGCATATTCATCTAAGGCTATCATGCGAGATCGTCTTGGAGTCATCACTCAAGAACACATTGGTTGCAGTTTTGGTACCTGGTGA 2703 0.4203 MSVFDTYNVDFFHQCNHSSKRKFDDCIPIFDEEDDDCAVDFQFRIKKDELKAVNSTSNAAAMSTEVLARVSDARLAPLHACAASNSESTRYNSRLQFFVRMISNTVVMHACPQDSVRSIHERIEMMTGIPMEEQCLIYKGKHLRWEQTLYECAIESDANIQMIGRLRSTLHPKGWQIIDDMISLILRLCRGEMVHDSLKIINDLMTSYLNPTFKKINDPMNTESELINSYFNIFLSSNVPVFLVMLYISPWQGNKELADLSIRHFLSSCKTIINKGLYCLRARLVLELCKVLKRVGSDDPLYMLSRSTFMSLLETAAVSYCSVNGEGNILLQDISPFVRELVDKLLRDLDLSKAVPLCVGPLINDVRDFTAFLLPMRKGIKELQTVKGSSEIKELHTLNGSIIDEKLHEELLRASLEADNLHLIFIQLLKKMGECLRSMDECLANKELGDFISSAWSQYLSILKELYQITKLYDGTEEMFWRVLMQRRRMVCLLIVKFAKRTDDHNWILDHKALTDFESRRHLVLMLFPGVREDYVELHEMLIDRSQLFAESFNYIKHAEAASLRAGLFMEFKNEEATGPGVLREWFFLVCHAIFNPQNVLFLACPNDRRRFFPNPASKVDPMHLEYFKFSGRVIALALKHRVQVGIVFDRVFFMQLMGKRITLEDIQDADPYLYSSCKQILEMDADFIDSDALGLTFVREVEELGYRKVVELCRGGESLVVNSKNREKYVNLLIQSRFQTSIFQQVSYFAKGFADILSDSKLQQFFFQSLELKDLDCMLHGSEKTISVEEWKAHTEYSGYKESDHQISWFWEIVGRMSAEQRNVLLFFWISVKYLPVEGFRGLGSRLYIYKSLEPDDRLPSSHTCFYRLCFPAYSSKAIMRDRLGVITQEHIGCSFGTW 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0240 900 Gene3D - 94 163 - -
Lal3g0240 900 SUPERFAMILY Hect, E3 ligase catalytic domain 534 885 IPR035983 GO:0004842
Lal3g0240 900 ProSiteProfiles Ubiquitin domain profile. 95 169 IPR000626 GO:0005515
Lal3g0240 900 Gene3D Hect, E3 ligase catalytic domains 542 773 - -
Lal3g0240 900 CDD HECTc 539 898 IPR000569 GO:0004842
Lal3g0240 900 Gene3D Hect, E3 ligase catalytic domain 660 742 - -
Lal3g0240 900 ProSiteProfiles HECT domain profile. 560 900 IPR000569 GO:0004842
Lal3g0240 900 Pfam Ubiquitin family 98 167 IPR000626 GO:0005515
Lal3g0240 900 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 83 898 - -
Lal3g0240 900 Gene3D Hect, E3 ligase catalytic domain 783 899 - -
Lal3g0240 900 SMART hect_3 558 898 IPR000569 GO:0004842
Lal3g0240 900 SUPERFAMILY Ubiquitin-like 86 168 IPR029071 -
Lal3g0240 900 SMART ubq_7 95 165 IPR000626 GO:0005515
Lal3g0240 900 Pfam HECT-domain (ubiquitin-transferase) 589 891 IPR000569 GO:0004842
Lal3g0240 900 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 83 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0240 Lal-Chr3 1571223 1575891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0240 - - gmx:100789233 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1517 5 17668055 17674959 Lal3g0240 3 1571223 1575891 LSH