Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0237 ATGGAAATGGACTCCGGCAAACTTTTCGTTGGAGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAGTATTTCCAGAATTTTGGAGATGTAGTGGAAGCAATGATAATGAAGGATCGAACCACGGGACGTGCCCGTGGTTTCGGCTTTATTGTTTTTGCTGATCCTTCTGTTGCTGAGAAAGTTGTTTTGGAAAAGCATGTCATAGATGGAAGAACTGTTGAAGCAAAAAAGGCCATCCCTAGAGATGATCAGAGTATTCTGAACAGAACAAACAATAGCAGTCATGGGTCTCCTGGTCCTACTCCTAGTCCTACCCGCTCAAAAAAGATATTTGTTGGAGGTCTAGCATCTACAATTACTGAGAGTGACTTTAAGAAATACTTTGATCAATTTGGAACAATTACAGATGTTGTCGTGATGTATGACCATAGCACTCAAAGGCCTAGAGGTTTCGGATTCATCACCTTTAGTTCTGAGGATGGAGTTGAGAAGGTGCTCCAAAAAACTTTTCATGAACTGCATGGTAAAATGGTTGAGGTTAAAAGGGCTGTTCCAAAGGAATTTTCTCCAAGTCCAAATAGAGCTCAGTTAGGTGGATATAACTACGGTCTAAGTAGAGTTAGTAGCTTTGCTAATGGTCTTGTTCAGGGATATAATTCAAGTTTGGTTGGAGGGAATGGACTTAGAATAGACGATAGATTGAGTCCCGGTACTGTTGGTCGCAGTGGATATCCTTTCATGAGTCCTAGTTATGGGTCAGAGCTCAGCTTTGAGCCATCGTTGAGCCAAAATGAAAACTTTGCTTCCACCCTTCTCTTAGGACGTGCATTGAACCCTTCATTTAGTGGAAGTCCTATCAGGTACAGTAATTCAATGGGGTATGCTGGTACAAGTGCATGCAACAATTCAACCATAAGTTCAACAATGCAGAATTTTTGGGGGAATGGGAATCTAAACTACGCTACAAACCCTAGAAACTCCGATTCTTATGTTGGCTATGGAAGCGATAATTCAAACATGGGTTCTTTTGGTCGTATTGGACAACTTTGGAGTTCCTCCATTGGCACTGATCAAGCTGGAACCACTGGCTCCGGTTATGATAAGAGCAGTCCTAGTTATAGCTCCGGAGATGTGATTTTAGGATCAAAAGCAGTAGGTTATGAAAAAAGTCAAGAAAAATTTGCTGCACCGGCCTCATCATATGGTCTATCAAACGGAAAGTATGATGAGACGTACAATTACAAAGATACTTATGAAGCTGGATCGTTCTACGGGGTCCATACTTGGAGATTCTCACCTTCAGAACAAGAGGATGCTGGCTCTCTTGGTTTTGGCCTTGGTAATGTTGTTTCAGATTTAATGAGCCAAAGATCTGGTGCCCATATTGAGGCTCATGCCGTTGCCAATAGACAACCAAATAGAGATTTCTTAGAGCAGAAGGCAAAAGATTGTGGAAAGCATAATTTGTATTGTTCTGAT 1485 0.4175 MEMDSGKLFVGGISWDTNEDRLRQYFQNFGDVVEAMIMKDRTTGRARGFGFIVFADPSVAEKVVLEKHVIDGRTVEAKKAIPRDDQSILNRTNNSSHGSPGPTPSPTRSKKIFVGGLASTITESDFKKYFDQFGTITDVVVMYDHSTQRPRGFGFITFSSEDGVEKVLQKTFHELHGKMVEVKRAVPKEFSPSPNRAQLGGYNYGLSRVSSFANGLVQGYNSSLVGGNGLRIDDRLSPGTVGRSGYPFMSPSYGSELSFEPSLSQNENFASTLLLGRALNPSFSGSPIRYSNSMGYAGTSACNNSTISSTMQNFWGNGNLNYATNPRNSDSYVGYGSDNSNMGSFGRIGQLWSSSIGTDQAGTTGSGYDKSSPSYSSGDVILGSKAVGYEKSQEKFAAPASSYGLSNGKYDETYNYKDTYEAGSFYGVHTWRFSPSEQEDAGSLGFGLGNVVSDLMSQRSGAHIEAHAVANRQPNRDFLEQKAKDCGKHNLYCSD 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0237 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 170 IPR000504 GO:0003723
Lal3g0237 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Lal3g0237 495 Gene3D - 4 88 IPR012677 -
Lal3g0237 495 MobiDBLite consensus disorder prediction 81 110 - -
Lal3g0237 495 Gene3D - 107 196 IPR012677 -
Lal3g0237 495 SUPERFAMILY RNA-binding domain, RBD 102 207 IPR035979 GO:0003676
Lal3g0237 495 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Lal3g0237 495 SUPERFAMILY RNA-binding domain, RBD 4 100 IPR035979 GO:0003676
Lal3g0237 495 MobiDBLite consensus disorder prediction 86 106 - -
Lal3g0237 495 CDD RRM2_DAZAP1 108 187 IPR034131 GO:0003723
Lal3g0237 495 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 476 - -
Lal3g0237 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Lal3g0237 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal3g0237 495 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal3g0237 495 SMART rrm1_1 111 183 IPR000504 GO:0003723
Lal3g0237 495 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0237 Lal-Chr3 1553196 1556294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0237 8 249 Eukaryotic Initiation Factors Gene Family AT2G36660 29.644 5.61e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0237 K14411 - pvy:116115801 574.318