Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0236 ATGCAAACCTCTAAGAAACACGCAACTTCGCCCGGTGTCTATTTATACCACCAGCCCGTGGAAGGAATTGATCCTTACACAAGTTACCAAATACTACAAAGCAATTCATGCCATGATGTACATGATTGTAGCAGCAGCCAAGGAACCATTGCTTCTTTTGAAACAATCAAGGAGCAATACTTTACCCTCGAATCGTCTCCAGCAACCATTGGTCTCATTGGTTGTGATTCTCCGTCTTATGCTAGTGTATCATCCAATAGGAGCCCCTTTTCTCCACAAGGTTCTCAATCATACAATTCAGATCAGCATCAGTCATCTAACAACACATATGGATCACCAATAAGTGTGTACTCTAGTGCTGATGATGACTATGAATTGAAGCACAAACTTAGAGAACTCGAGATTTCGTTGTTGGGGCCTGAATCGGATATTGTCGACAGTTGTCATTGTTGCTTCAAGGGTGACCACCAAGGAGGATCTCCAATAGATAAATATAATTGGGTTCATATTGTAGAAATGATTCCTAAGTTAGACTTGAAAGAAGTCCTGGTTCTATGTGCAAGAGCCGTGTCGGATGAAGATTTTCAGACAGTGATAGGATGGATGGATAATGTGTTAGTGAAGATGGTATCTGTTGCTGGGGAACCCATCCAGAGGCTAGGTGCTTACATGTTGGAGGGTCTTAGAGCAAGGTTGGAATCATCAGGGAGCCTAATCTACAAAGCCTTGAAGTGTGAACAACCAACAAGTAAAGATTTAATGACTTACATGCATATCCTGTATCAGATTTGCCCATATTGGAAGTTTGCTTACATATCCACCAATGTTGTCATTGGAGAAGCAATGCAAAATGAACCGAGGATTCATATAATTGACTTCCAAATTGCACAGGGCACACAATGGATGTTACTTATGCAAGCTTTTGCATGTAGGCCTGGTGGTCCTCCATTCATTCGCGTAACCGGTGTTGATGATTCCCAATCATTTCATGCTAGGGGTGGAGGACTAGATATTGTAGGGAAACGGCTCTCGGATTATGCCAAATCTTGTGGAGTGCCATTTGAGTTCCATAGTGCAGCCATGTGTGGCAGTGAGGTTGAACTAAAAAACCTTGTAGTTCGACCCGGGGAAGCACTGGCTGTAAACTTCCCTTATGTTTTGCACCACATGCCGGACGAGAGTGTGAGTACGGAGAACCATAGAGACAGGCTATTGAGATTGGTGAAGAACTTGTCACCGAAGGTTGTGACCCTTGTTGAGCAAGAATCCAACACCAACACTTCTCCCTTTTTCCAAAGGTTTGTTGAGACCCTGGACTATTACACTGCTATGTTTGAATCAATAGACGTGGCGCGTCATAGAGATGATAAGCAAAGGATTAGTGCAGAGCAGCACTGCGTGGCTCGTGACATCGTCAACATGATAGCTTGTGAGGGTGCTGAGAGGGTGGAAAGGCATGAACCTTTTGGAAAGTGGAGGTCAAGATTTTCAATGGCTGGATTTGCACCATATCCATTGAGTTCCTCTGTGACAGGTGCAGTCAGAAATATGTTGAATGAATTCAATGAAAATTATAGGGTTGCACATAAAGATGATGCTCTTTATCTTGGCTGGAAGAATAGACCTATGTCCACCTCTTCTGCTTGGAGATGTTACTGA 1659 0.4328 MQTSKKHATSPGVYLYHQPVEGIDPYTSYQILQSNSCHDVHDCSSSQGTIASFETIKEQYFTLESSPATIGLIGCDSPSYASVSSNRSPFSPQGSQSYNSDQHQSSNNTYGSPISVYSSADDDYELKHKLRELEISLLGPESDIVDSCHCCFKGDHQGGSPIDKYNWVHIVEMIPKLDLKEVLVLCARAVSDEDFQTVIGWMDNVLVKMVSVAGEPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPTSKDLMTYMHILYQICPYWKFAYISTNVVIGEAMQNEPRIHIIDFQIAQGTQWMLLMQAFACRPGGPPFIRVTGVDDSQSFHARGGGLDIVGKRLSDYAKSCGVPFEFHSAAMCGSEVELKNLVVRPGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKNLSPKVVTLVEQESNTNTSPFFQRFVETLDYYTAMFESIDVARHRDDKQRISAEQHCVARDIVNMIACEGAERVERHEPFGKWRSRFSMAGFAPYPLSSSVTGAVRNMLNEFNENYRVAHKDDALYLGWKNRPMSTSSAWRCY 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0236 552 Pfam GRAS domain family 179 550 IPR005202 -
Lal3g0236 552 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 549 IPR005202 -
Lal3g0236 552 MobiDBLite consensus disorder prediction 84 112 - -
Lal3g0236 552 ProSiteProfiles GRAS family profile. 170 550 IPR005202 -
Lal3g0236 552 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0236 Lal-Chr3 1550520 1552178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0236 1 550 GRAS Transcription Factor Family AT4G17230 59.132 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lal3g0236 GRAS 6.3e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0236 - - gmx:100819190 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0236 3 1550520 1552178 Lal11g0376 11 2768876 2770531 LSH