Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0232 ATGGGTCGTTCTCGCGGGAATTTTCACCCTGCCGATGAGGACCCCAATCAAAGGTCAAGAAGAAAAAAGAATGCTGCCAGTGGAGAAAATTTAGAATCTGGTGCAGCAGGCCAAGGAGCAAGTGAAGGGAAAAGGGCTTTGTATCACTGCAATTATTGTAATAAAGATATTACAGGAAAAATCCGTATTAAGTGTGCCATGTGCCCAGATTTCGACCTATGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCACAAAAGCAATCACCCTTACAGGGTTATGGATAATTTGTCTTTCCCTTTTATTTGCCCAGAGTGGAATGCAGATGATGAAATTCTGCTTTTAGAGGGGATTGAAATGTATGGCTTGGGAAATTGGACTGAAGTTGCTGAGCATGTTGGGACAAAGAACAAGGAATCATGCATAGAACACTATAAGAATGTGTACTTGAGCTCCCCGTTCTTTCCTCTTCCGGACATGTCTCATGTTGTTAAGAAAAACAGAGAAGAACTTCTTGCCATGGCAAAAGGGCAGGCCGAGGACAAGAAAGGAATTTCCATGGGAGATCTTGGTTTAAAGGAAGAATCACCCTTTTCTCCATCTAGAGTCAAAGTTGAAGATTCACATAAAGGTGGTTCCTCTAGTCGTTTGCTTTCAAGTTTAAACTCAGAGTCAGAATCTGGTTCTGCTGGTAACCAGAAGGCATCCAATTCAGCCCGGGTAAAAGATGGTCCCGGAGTCATTAAAATGGAAGATCCTCAAGTAGACAGGAATTTTGGAGGAAAGAAGCCAAGCTCCTCGGGAAATGAAGGTCCTTCTTTAGTAGAATCAAGTGGTTATAACCAAAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTTGCTGAAATGGAATTTAAGGACACTGACACAGAGGAAGAGCGAGAGCTGAAACTACGTGTATTGCGTATCTATGGGAAAAGGCTTGATGAAAGAAAGCGCAGAAAGGATTTCATACTTGATAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAGAAGGCAATATGTCGGAAATATGACTTATTCATGCGCTTTCATTCCAAAGAAGAGCATGAGGAATTGCTCAGAACAGTTATCTTTGAACATAGAACTCTTAAAAGACTTCAAGAACTCAAGGAAGCTCAGGCTGCTGGTTGCCGCAATGCAGCTGAAGCAGATAGGTATCTGGTGCAAAAGAGAAGAAGGTTAGCAGAAGAAACTGCCCGTAGGGCTAAAGAAACTGCTCAGGTTGGCCCAAGCTCTCAGGGGATTCCCAATGCACTAATGTCTCCAGACTCTGCTGCCAAGGATTTGAATACAAGAGCAGCAGGGCCTGCTACCTCAAGCTCTGTCAATGAAATTGATATAACAGGATACTATGGGGCAGATTTACTTTCTGAACCTGAGAAACGTTTATGTTGTGAGCTAAGGTTGCCTCCAGCCGTATATTTGAAGATGCAAGAGCGACTGTCTGTAGAAATACTTAGCGGCACTGTCTCTACAAAATCGGATGCTCATCGATTATTCAAGATGGATACCATCAAAATCGACAGGGTATATGATATGCTCGTAAAAAAGGGAATTGGTTCCCCTTGA 1653 0.4241 MGRSRGNFHPADEDPNQRSRRKKNAASGENLESGAAGQGASEGKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPFICPEWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYKNVYLSSPFFPLPDMSHVVKKNREELLAMAKGQAEDKKGISMGDLGLKEESPFSPSRVKVEDSHKGGSSSRLLSSLNSESESGSAGNQKASNSARVKDGPGVIKMEDPQVDRNFGGKKPSSSGNEGPSLVESSGYNQKRQEFDPEYDNDAEQLLAEMEFKDTDTEEERELKLRVLRIYGKRLDERKRRKDFILDRNLLYPNPFEKDLTPEEKAICRKYDLFMRFHSKEEHEELLRTVIFEHRTLKRLQELKEAQAAGCRNAAEADRYLVQKRRRLAEETARRAKETAQVGPSSQGIPNALMSPDSAAKDLNTRAAGPATSSSVNEIDITGYYGADLLSEPEKRLCCELRLPPAVYLKMQERLSVEILSGTVSTKSDAHRLFKMDTIKIDRVYDMLVKKGIGSP 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0232 550 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Lal3g0232 550 ProSiteProfiles SANT domain profile. 104 155 IPR017884 -
Lal3g0232 550 MobiDBLite consensus disorder prediction 1 38 - -
Lal3g0232 550 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Lal3g0232 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Lal3g0232 550 Gene3D - 465 548 IPR036388 -
Lal3g0232 550 Pfam Zinc finger, ZZ type 47 88 IPR000433 GO:0008270
Lal3g0232 550 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Lal3g0232 550 MobiDBLite consensus disorder prediction 1 27 - -
Lal3g0232 550 PIRSF Txn_adaptor_ADA2 35 550 IPR016827 GO:0003713|GO:0006357|GO:0035065
Lal3g0232 550 MobiDBLite consensus disorder prediction 426 451 - -
Lal3g0232 550 MobiDBLite consensus disorder prediction 214 241 - -
Lal3g0232 550 SUPERFAMILY RING/U-box 48 110 - -
Lal3g0232 550 Gene3D - 40 96 IPR043145 -
Lal3g0232 550 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Lal3g0232 550 CDD SANT 107 150 IPR001005 -
Lal3g0232 550 MobiDBLite consensus disorder prediction 181 282 - -
Lal3g0232 550 MobiDBLite consensus disorder prediction 262 282 - -
Lal3g0232 550 MobiDBLite consensus disorder prediction 433 447 - -
Lal3g0232 550 CDD ZZ_ADA2 48 96 IPR041983 -
Lal3g0232 550 Gene3D - 103 153 - -
Lal3g0232 550 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 549 - -
Lal3g0232 550 SMART sant 104 153 IPR001005 -
Lal3g0232 550 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Lal3g0232 550 ProSiteProfiles SWIRM domain profile. 464 550 IPR007526 GO:0005515
Lal3g0232 550 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 549 IPR034318 GO:0003713|GO:0006357|GO:0035065
Lal3g0232 550 SMART zz_5 44 89 IPR000433 GO:0008270
Lal3g0232 550 SUPERFAMILY Homeodomain-like 459 547 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0232 Lal-Chr3 1528070 1534312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0232 1 548 EF-hand Containing Proteins AT3G07740 47.443 2.44e-164 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal3g0232 Myb_DNA-binding 4.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0232 K11314 - gmx:100811887 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0232 3 1528070 1534312 Lal11g0371 11 2728468 2731837 LSH