Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0226 ATGGGGAATGTTAATGATAGAGAAGAAGATTTCAATGTTACTACTCCTTCGGAACCTCAACAAAATGAAGAACAAGAAGAATGTGAGAGTGTTGTGCCTTCTGAGTTGATGGGTCAGGATCCACCAGCTAGCCCTAGAGCTACCCATTCTCCATTCATGTTCATCCCTCAAGTACCAGTGGTTCCACTACAAAGACCTGATGAGATGCATGTTCCAAGTCCTTCCTGGATGCAAACTAGTTCAGGGTATGAAGATATGTACAATGAACTAGGAATTCCAACAATGATTACTTGGGGTTATGGAGGGAAAGAAGTAGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATACCCTTGCAAAGATCAGGGAAGGACTTCACAATAATGAAGGTACTGCCATCTGGTGTTTACCAGTTCAGGTTCATTGTTGATGGGCAGTGGAGGTACGCACCTGACTTGCCTTGGGCCCAAGATGAGGCTGGGAATGCTTACAACATTCTGGACTTACAGGATTCTGTTCCTGAAGATATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGAATCTAGTTATAACAACCTACAACTTAGTTCTGAAGATTATGCAAAGGAGCCACCATTGGTTCCTCCGTACTTGCAAATGACACTTCTTAACGTTCCTTCAACAAATATGGAAATCCAGCCCCCGATATCAAGACCGCAGCATGTAATGCTCAATCATCTCTACATGCAGAAAGAAAAGGGTAGCCCTTCAGTCGTTGCACTTGGTACAACTCATCGGTTCTTAGCCAAATATGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA 840 0.4321 MGNVNDREEDFNVTTPSEPQQNEEQEECESVVPSELMGQDPPASPRATHSPFMFIPQVPVVPLQRPDEMHVPSPSWMQTSSGYEDMYNELGIPTMITWGYGGKEVAVEGSWDNWKTRIPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDEAGNAYNILDLQDSVPEDIGSISSFEPPKSPESSYNNLQLSSEDYAKEPPLVPPYLQMTLLNVPSTNMEIQPPISRPQHVMLNHLYMQKEKGSPSVVALGTTHRFLAKYVTVVLYKSLQR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0226 279 CDD E_set_AMPKbeta_like_N 93 169 - -
Lal3g0226 279 Gene3D - 180 277 - -
Lal3g0226 279 SMART AMPKBI_2 187 277 IPR006828 GO:0005515
Lal3g0226 279 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 205 275 IPR006828 GO:0005515
Lal3g0226 279 MobiDBLite consensus disorder prediction 1 48 - -
Lal3g0226 279 SUPERFAMILY E set domains 92 171 IPR014756 -
Lal3g0226 279 Gene3D Immunoglobulins 86 174 IPR013783 -
Lal3g0226 279 Pfam Glycogen recognition site of AMP-activated protein kinase 92 172 IPR032640 -
Lal3g0226 279 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 279 IPR043554 -
Lal3g0226 279 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 279 - -
Lal3g0226 279 SUPERFAMILY AMPKBI-like 174 276 IPR037256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0226 Lal-Chr3 1508313 1511708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0226 49 172 Protein tyrosine phosphatase (PTP) family AT3G01510 27.068 1.52e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0226 K07199 - gmx:100777497 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1535 5 17979203 17982205 Lal3g0226 3 1508313 1511708 LSH
Lal19g1543 19 17652411 17654886 Lal3g0226 3 1508313 1511708 PCT