Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0223 ATGGGTGATTCAGACAATGAATCAGGAGGAGGTAAAGTTTCAGGTAATAATAGAAGTGGAAGCAATGAATTGAGAGGGTGCAGAGAGCAAGACAGGTACCTTCCAATAGCCAACGTGAGCAGGATCATGAAGAAGTCATTACCAGCCAACGCAAAGATCTCAAAGGAAGCAAAAGAGACAGTACAAGAATGTGTATCAGAGTTCATTAGCTTCATAACTGGAGAGGCTTCAGATAAGTGCCAGAAAGAGAAGAGGAAAACTATCAACGGTGATGATTTGTTGTGGGCCATGACTACACTTGGTTTTGAAGGGTATGTGGACCCACTCAAGGTATACTTGCAAAAGTATAGGGAGATGGAAGGGGACAAGAGTGGTTTGATGCAGCAGCAGGGTGATCATAGAGATGGTGGTGAGGGTTATGGTCAAGGTCATCAAGGTAGTAGTATCATGTCATACCCTATGATGATGACTATGGGGCATCACCATCAAGCACACATGTATGGATCTGGTAGTGCTAGTGGATCACCTTCTTCTAGAAGGCCTAGATAG 549 0.4408 MGDSDNESGGGKVSGNNRSGSNELRGCREQDRYLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEGYVDPLKVYLQKYREMEGDKSGLMQQQGDHRDGGEGYGQGHQGSSIMSYPMMMTMGHHHQAHMYGSGSASGSPSSRRPR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0223 182 MobiDBLite consensus disorder prediction 126 148 - -
Lal3g0223 182 Gene3D Histone, subunit A 23 146 IPR009072 GO:0046982
Lal3g0223 182 SUPERFAMILY Histone-fold 30 134 IPR009072 GO:0046982
Lal3g0223 182 MobiDBLite consensus disorder prediction 9 23 - -
Lal3g0223 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 167 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal3g0223 182 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Lal3g0223 182 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Lal3g0223 182 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Lal3g0223 182 MobiDBLite consensus disorder prediction 1 27 - -
Lal3g0223 182 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 167 - -
Lal3g0223 182 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lal3g0223 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0223 Lal-Chr3 1500962 1501510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0223 1 166 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.857 7.49e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal3g0223 CBFD_NFYB_HMF 3.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0223 K08065 - gmx:100305641 233.802