Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0218 ATGCTCAGCCATGGATTTTGCCAGTCTGATCTCAATTTAAACTCTTTAGCATATCCGATGGACTCGAAGACTAGTGCTAGAGCTCTCCCAAAACAGCAGCAGAAGACAGCTGGGATTGAACCCCTTGAGACAAAAGGCGTCAGACATCCTTCAGTGCCGGTCTTGAAGGCAGGTAGACCCGAGCCCGATGCCTGTGAAGATAAATCGAAGACTGTGCAAAATTCGTTAAGGCAGAATACTGTGGAAATTCCTGACATCAACAAGTTAGAAATTTCAGCCCAAAAGGGGTCTGCTTCCTCATCCGTCCTTGACAAAGAAGTGGTTCGAGCTGTCGTTGAGAAGACAAGCTCGCAGGAAAAATCTATTGACCAGGACAAAAAGACACCGGGATATGGAAGTGTGAAGAATAGTTCTGTTTCTGCTAAAGTTAGTGATGGGGCCAGCAGTCTTGCAAAGACAAGTGGAAGTGCTAAGATCAGTGACCGAGCTGATTTTGTTGAGAGTGGCAAGAGCAGTATTTGCAGAGGAAGTACAAGTAGTGATGTCAGTGATGAGAGTACCTGTAGTAGCTTTAGTAGCAGCATAAACAAGCCTCACAAGGCAAATGATATGAGATGGGAAGCTATCCAAGTTATGCGAACAAGAGATGGGATGTTGGGTTTAGGTCAGTTTAGACTGCTGAAGAGGTTGGGCTGTGGAGATATCGGCAGTGTATATCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTGATGGACAAAGGGTCCCTAGCAAGTCGCAAAAAGCTACTTCGTGCTCAGACAGAAAGAGAAATTCTGCAGTCACTTGACCACCCCTTTCTCCCAACTTTGTATACCCATTTTGAGACAGAGAAATTCTCATGCTTGGTAATGGAATTCTGCCCTGGTGGAGACCTCCATACACTTAGGCAGAAGCAACCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAATTTTATGTGGCAGAGGTCCTACTGGCTATGGAGTACCTCCACATGCTTGGAATTGTCTACCGTGACCTGAAGCCAGAAAATGTCCTTGTTAGAGATGATGGACATATTATGCTCTCTGACTTTGACCTTTCTCTCCGTTGTACTGTTAGCCCAACCCTGGTAAAAAGCACAGCTATGGATTCTGAGCCTTTAAGAAATAATACAACATATTGTGCCCAGCCTTCATGTATTGAGCCATCTTCCTGTATCCAGCCATCATGTGTTGCTCCTACCACATGCTTTTCACCACGTCTCTTCTCTAGCAAATCAAAGAAGAGCCGCAAGCCCAAAAATGAAATCGGCAACCAAGTGAGTCCATTACCTGAGCTTGTTGCTGAGCCTACCGATGCTCGGTCAATGTCATTTGTTGGAACTCATGAATACTTGGCACCCGAGATCATTAAAGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACGTTTGGAATTTTTCTATATGAGCTGTTGTTTGGTAAGACTCCTTTTAAAGGATCTGGGAACCGAGCAACGTTGTTCAATGTTGTAGGTCAGCCGCTGCGATTTCCAGAAGCACCTGTTGTCAGTTTTGCAGCAAGGGATCTTATAAGGGGGTTGCTTGTGAAGGAACCTCAACACAGATTGGCATATAAAAGAGGTGCTACTGAAATTAAGCAACATCCCTTTTTTGAAGGTGTGAATTGGGCATTGATCCGTTGTGCTACGCCACCTGAGATCCCAAAGCATGTAGAGTTTGAGAAGGTCCCTCCTCCAACATCATCAGCTGTTGAAAAATCTGCTAATCATATGTCAATAGCTAATAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1863 0.4461 MLSHGFCQSDLNLNSLAYPMDSKTSARALPKQQQKTAGIEPLETKGVRHPSVPVLKAGRPEPDACEDKSKTVQNSLRQNTVEIPDINKLEISAQKGSASSSVLDKEVVRAVVEKTSSQEKSIDQDKKTPGYGSVKNSSVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSINKPHKANDMRWEAIQVMRTRDGMLGLGQFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCTVSPTLVKSTAMDSEPLRNNTTYCAQPSCIEPSSCIQPSCVAPTTCFSPRLFSSKSKKSRKPKNEIGNQVSPLPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKHVEFEKVPPPTSSAVEKSANHMSIANNQKGSDNYLEFDFF 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0218 620 MobiDBLite consensus disorder prediction 428 448 - -
Lal3g0218 620 SUPERFAMILY Protein kinase-like (PK-like) 197 588 IPR011009 -
Lal3g0218 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Lal3g0218 620 MobiDBLite consensus disorder prediction 130 153 - -
Lal3g0218 620 ProSiteProfiles Protein kinase domain profile. 224 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0218 620 MobiDBLite consensus disorder prediction 52 79 - -
Lal3g0218 620 Gene3D Phosphorylase Kinase; domain 1 217 309 - -
Lal3g0218 620 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 22 620 - -
Lal3g0218 620 PANTHER FLIPPASE KINASE 1-RELATED 22 620 - -
Lal3g0218 620 MobiDBLite consensus disorder prediction 113 153 - -
Lal3g0218 620 Pfam Protein kinase domain 459 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0218 620 Pfam Protein kinase domain 225 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0218 620 CDD STKc_phototropin_like 223 580 - -
Lal3g0218 620 SMART serkin_6 224 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0218 620 Gene3D Transferase(Phosphotransferase) domain 1 310 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0218 Lal-Chr3 1450767 1455263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0218 81 620 AGC Kinase Gene Family AT5G47750 80.147 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lal3g0218 Pkinase 1.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0218 K08286 - gmx:100781600 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1543 5 18035527 18039692 Lal3g0218 3 1450767 1455263 LSH
Lal3g0218 3 1450767 1455263 Lal11g0357 11 2622453 2626735 LSH