Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0188 ATGAAGGAAGGGAGTGGTAGGAAGCATGGAGCAGCTACACCATGTGCTGCATGCAAGCTTCTAAGGAGAAGGTGTGGCCAAGAATGTGTATTTGCTCCATATTTCCCATCTAATGAACCCCACAAGTTTGCAAATGTGCACAAGGTATTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACCTACCAATGCATCAACGAGGGGATGCAGTGAGCAGCATGGTGTATGAGGCCAATGCCAGAGTGAGAGACCCTGTTTATGGCTGCGTAGGAACCATCTCTTCTCTTCAGCAACATATTGATGTGCTTCAGACCCAATTGGCCCAGGCCCAAGCTGAGGTGGTCCACCTAAAGGCCCGTCAAACTAGATGCTATTCCAATCCTGGGCTTTGCCCCAATAGCCCAACTAATAGTTGCTCTCCATCATCCAAGATCATGGGCTCCTATGCAAAGCCTATTTTTGACATGGACATGGTAGTGGATCAGGCTATTTATGGTGATTCAATGTGGTCATGA 516 0.4767 MKEGSGRKHGAATPCAACKLLRRRCGQECVFAPYFPSNEPHKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGTISSLQQHIDVLQTQLAQAQAEVVHLKARQTRCYSNPGLCPNSPTNSCSPSSKIMGSYAKPIFDMDMVVDQAIYGDSMWS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0188 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 153 - -
Lal3g0188 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 153 - -
Lal3g0188 171 Coils Coil 93 120 - -
Lal3g0188 171 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Lal3g0188 171 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0188 Lal-Chr3 1261112 1262668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0188 1 171 AS2 family AT1G31320 72.093 1.80e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal3g0188 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0188 - - gmx:100794219 281.952