Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0182 ATGGAGGATTCCGACGGAGTCCTCAACTTCGATTTCGAGGGCACTCTCGACGCCGCTCCTCTCCCCTCCATCACTACCACCACCATCCCCGCCTCTTCTGTACCTCTCATCCACCACGATTCCTCCTCTCTCGCTTCCTCCATTCCCAACGGTAACTCCGTCGCCATAACCCCTCATTCTGCCTCCGACCACACCTCCGCCAATATCCAAGGCCGGCGTAGCTTCCGGCAGACGGTGTGCCGGCATTGGCTTCGAAGCCTGTGCATGAAGGGAGACGCGTGCGGGTTTCTTCATCAGTATGATAAGGCGAGGATGCCGGTGTGCCGGTTTTTTCGGCTTTACGGAGAGTGCCGGGAACAGGATTGTGTTTATAAACACACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCCAATGGGCCTGATTGCCGATATAGACATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGATCCTTCAAAAGATCCAGCATTTGACTTCTTATAACTACAATGGGCCCAACAAAATTTTCCAACAAAGGGGTGCTAGCTATAATCAACAAGTTGAAAGATCTCAGTTTCCTCAAGGAGTTAATTCTACAAACCAAGGTGTTACTGCAAAGCCATTAGTAGCAGAGCCAGGTAATGCCCAGCAGCAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAACCAGAGCCAAATGCAAAGTCCTGTTAATGGCCAGCCCAATCAAGCGAATAGAACTGCAACCCCTTTACCTCAAGGAATATCTAGGTCTGTTCAGAGTCTTGTAGTTTTCAATCGGACTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAACCTTGAGTTATCTGTGCAACAAGGAGTGTGGGCAACTCAAAGGAGCAACGAATCCAAACTAAATGAAGCCTTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTCAATCGAACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTTCCGGGGGAAACTGGAAATATGCTCATGGAACTGCACATTACGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCGTTCCACAAAACACGCTACTTACGGAATCCATACAATGAGAACTTGCCAGTGAAGATAAGTAGAGATTGTCAAGAGCTGGAACCCTCTATTGGTGAGCAATTAGCATCCTTGCTTTATCTGGAGCCAGACAGTGAACTCATGGCTATGTCAATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTAAATCCAGATAATGGAGGAGAAAATCCAGATATTGTACCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAGAGTGACGAAGAGGAGGAGAGCTTTGGTCATGGTGTTGGGCCACTTAGCCAAGGCAGAGGAAGGGGCAGAGGCATGATGTGGCCGCCTCACATGCTTGGGCGTGGAGCCAGACCTATGCCTGGAATGCCAGGTTTTAACCCAGGAATGATGGGTGATGGATTACCTTATGGACCTGATGGATTTGGTATGCCAGATCTTTTTGGTATGGGTTCCCGTCCTTTTGCTCCATTTGGTCCTAGGTTCTCTGGTGATTTTGGAGGGGCCCCAGCAGCCATGATGTTTCGTGGGCGACCCTCACAACCTGGGATGTTTCCTGGTGGTGGGTTTGGGATGATGATGAATCCAGGACACCCTCCCTTTATGGGAGGAATGGGGGTTGGTGGTGGAAATCCATCAAGAGGTGGTGGTAGGCCAGTCAACATGCCTCCAATGTTTCCCCCACCTCCACCCCCACCTCAATATGCCAACCGAGTCCCCAAAAGAGATCAAAGAACTAATGATTGGAACGACAGGCACGGCTCAGGATCAGAGCCAAGCAGGAGTCAGGACATGCAGAGTCAAAGTGGGGGACCTGATGATGACATGCAATACCAGCAAGGATACAAGGCAAATCAGGATGATCGGAATGAAGATACTGTAAGTGAGGATGAAGCACCAAGACGGTCAAGACATGGAGAGGGGAAAAAGAAAAGGGACGCATAG 2088 0.4818 MEDSDGVLNFDFEGTLDAAPLPSITTTTIPASSVPLIHHDSSSLASSIPNGNSVAITPHSASDHTSANIQGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEILQKIQHLTSYNYNGPNKIFQQRGASYNQQVERSQFPQGVNSTNQGVTAKPLVAEPGNAQQQQQVQQSQQQVNQSQMQSPVNGQPNQANRTATPLPQGISRSVQSLVVFNRTRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVSGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRYLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAMSIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPLSQGRGRGRGMMWPPHMLGRGARPMPGMPGFNPGMMGDGLPYGPDGFGMPDLFGMGSRPFAPFGPRFSGDFGGAPAAMMFRGRPSQPGMFPGGGFGMMMNPGHPPFMGGMGVGGGNPSRGGGRPVNMPPMFPPPPPPPQYANRVPKRDQRTNDWNDRHGSGSEPSRSQDMQSQSGGPDDDMQYQQGYKANQDDRNEDTVSEDEAPRRSRHGEGKKKRDA 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0182 695 MobiDBLite consensus disorder prediction 220 260 - -
Lal3g0182 695 Coils Coil 222 242 - -
Lal3g0182 695 Gene3D ph1033 like domains 261 414 - -
Lal3g0182 695 SUPERFAMILY CCCH zinc finger 74 105 IPR036855 GO:0046872
Lal3g0182 695 SMART c3hfinal6 102 128 IPR000571 GO:0046872
Lal3g0182 695 SMART c3hfinal6 74 100 IPR000571 GO:0046872
Lal3g0182 695 SMART c3hfinal6 130 154 IPR000571 GO:0046872
Lal3g0182 695 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 693 IPR045168 -
Lal3g0182 695 MobiDBLite consensus disorder prediction 622 639 - -
Lal3g0182 695 ProSiteProfiles Zinc finger C3H1-type profile. 74 101 IPR000571 GO:0046872
Lal3g0182 695 MobiDBLite consensus disorder prediction 640 665 - -
Lal3g0182 695 MobiDBLite consensus disorder prediction 666 695 - -
Lal3g0182 695 MobiDBLite consensus disorder prediction 602 618 - -
Lal3g0182 695 MobiDBLite consensus disorder prediction 584 695 - -
Lal3g0182 695 ProSiteProfiles YTH domain profile. 276 411 IPR007275 GO:0003723
Lal3g0182 695 MobiDBLite consensus disorder prediction 450 468 - -
Lal3g0182 695 Pfam YT521-B-like domain 276 410 IPR007275 GO:0003723
Lal3g0182 695 Gene3D - 63 132 - -
Lal3g0182 695 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 693 - -
Lal3g0182 695 MobiDBLite consensus disorder prediction 426 488 - -
Lal3g0182 695 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0182 Lal-Chr3 1230314 1237996 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal3g0182 YTH 1.5e-26 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0182 K14404 - gmx:100802826 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0182 3 1230314 1237996 Lal3g0182 3 1230314 1237996 ECH
Lal5g1582 5 18317346 18326495 Lal3g0182 3 1230314 1237996 LSH