Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0179 ATGGCACTTTCTATGCACAAAGACACTAACTTTAACAAAGATTCAAGCAAGTATGTGAGGTACACACCAGAACAAGTAGATGCTTTAGAAAAGGTCTATGCTGAATGCCCCAAACCCACTTCTCTAACCAGACAACAACTCATTAGAGACTCTCCTATTCTCTCTAACATTGACCCTAAACAGCTCAAAGTATGGTTCCAGAATCGAAGATGTCGTGAGAAGCAAAGGAAGGAAGCTTCTCTTTTGCAAACAGTGAATAGAAAGCTATCTGCAATGAATAAGCTGTTGATGGAAGAGAATGACCGTCTCCAAAAGCATGTTTCCAATTTAGTTTATGAAAATGGTTATATGCAGCAACAGATAACCACTGTATCTGCTACTACCACAACAGGCAATAGTTGTGAGTCTGTGGTGATGACTGGTCAAAATCAACAGCAAAACCCAACACCTCATCAGCATCCTCAAAGGGATGCTAACAACCCAGCTGGTCGTCGAATTTTATGTTCTGCTAGTCTTCTCGCCGTCGCTGAGGAGACCCTGGCAGAGTTCCTATCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGCATCGTTGCTGTTTCTCGCAACTGTAGTGGAGTAGCAGCACGTGCCTGTGGCCTTGTGAGCCTAGAGCCCACAAAGGTTGCTGAGATTCTTAAAGATCGACTGTCATGGTATCGTGACTGCCGATGCGTTGATGTGTTGAGCATAGTCCCCACTGGAAATGGGGGCACAATAGAGCTCATGTACATGCAGACTTATGCGCCTACAACATTGGCAGCAGCACGTGACTTCTGGACACTCAGATACACTAGAAGTTTGGAAGATGGAAGTGTTGTGATATGTGAGAGATCATTGACTACTTCAACGGGTGGCCCTACAGGACCCCCATCTTCAAACTTCATAAGAGCTGAAATGCTTCCTAGTGGTTATCTAATCAGATCCTGTGATGGCGGTGGATCCATTATTCATATTGTTGATCATGTTGATTTAAATGTCTGGAGTGTCCCTGAAGTATTGAGGCCCCTCTATGAATCATCAAAAATCTTGGCTCAGAAATTAACTATTGCTGCCGTGCAACATATAAGACAGATTGCACAAGAATCAAGTGGAGAAGTTCAGTATGGTGGGGGGCGTCAGCCTGCTGTTTTGAGGAAATTGAGTCAGAGACTATGCAGGGGGTTCAATGATGCTGTGAATGGTTTTGTTGATGATGGTTGGTCTCTGATGGGTAATGATGGAGTAGAAGATGTGACAATAGCCATAAACTCATCTCCGAACAAATATTTAGGGTCCGAGTACAATTCGTCAATGTTCCCATCAATTGGAGGTGGAGTCCTGTGTGCCAAAGCGTCAATGCTGCTGCAGAATGTTCCTCCTGCTTTGCTTGTTAACTTTTTGAGGGAGCATCGGTCAGAGTGGGCTGATTATGGGGTTGATGCGTACACTGCTGCATGTCATAAGTCTAGTCCTTATGCAGTTCCTTGTGCAAGACCTGCCGATTTCCCCACAAGCCAGATCATTTTGCCTCTTGCTCATACAATTAAGCATGAGGAGTTCTTGGAGGTAATTCAAATAGAAGGTCATGCGTTCCCCCCGGATGATGTAGCTTTGCCACCGGACATGTATCTCTTACAGCTGTGCAGCGGGGTTGACAAAAACTCAATTGGGGCATGTGCTCAACTCGTCTTTGCTCCTATTGATGAAACATTTGCTGATGATGCTCCTTTACTGCCTTCTGGTTTTCGTGTCATATCATTGGCTCCTAAAATGGCTTCTCACACAACTAGGACATTGGATTTAACATCAACACTTGAAGTAGGATCTGGTAATAATCATCCAGCTGGTGAACCTGACTACAGCCTTAGGTCGGTCCTTACTATTGCATTCCAATTTACATTCGAGAACCATCTGCGAGACAGTGTTGCTAGTATGGCTCGTCAATATGTGCGGAGTGTTGTGGCATCGGTTCAGAGGGTTGCCATGGCAATAGCTCCCCCTCGACTCGGTACCCAGCTTAGGCCAAGTTTTCTTCCTGACTCGCCTGAGGCTCTTACTTTAGCTCGATGGATCTGTAGAAGCTACAGGATCCACACTGGTACAGAACTCTTCAGAGTTGAGTCAACATCTGGTGATGCAATCTTGAAGCAACTCTGGCACCATTCGGACGCAATCATGTGCTGTTCTGTAAAAACAAATGCATCTCCAGTATTCACCTTCACTAACCAGGCTGGACTTGACATGCTTGAAACTACTCTAGTTTCCCTTCAAGATATAATGCTTGATAAAGTTCTTGATGAAGCTGGTAAGAAGGTTTTTTGCTCTGAGTTTTCCAAAATAATGCAACAGGGTTTTGCATATCTGCCATCAGGAATATGTGTATCAAGTATGAATCGTTCAGTGTCTTATGATGAAGCCATTGCATGGAAAGTTCTGAATGAAGATGATTCCAATCACTGCCTTGCCTTCATGTTCATGAACTGGTCTTTTGTCTGA 2553 0.4458 MALSMHKDTNFNKDSSKYVRYTPEQVDALEKVYAECPKPTSLTRQQLIRDSPILSNIDPKQLKVWFQNRRCREKQRKEASLLQTVNRKLSAMNKLLMEENDRLQKHVSNLVYENGYMQQQITTVSATTTTGNSCESVVMTGQNQQQNPTPHQHPQRDANNPAGRRILCSASLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCVDVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTRSLEDGSVVICERSLTTSTGGPTGPPSSNFIRAEMLPSGYLIRSCDGGGSIIHIVDHVDLNVWSVPEVLRPLYESSKILAQKLTIAAVQHIRQIAQESSGEVQYGGGRQPAVLRKLSQRLCRGFNDAVNGFVDDGWSLMGNDGVEDVTIAINSSPNKYLGSEYNSSMFPSIGGGVLCAKASMLLQNVPPALLVNFLREHRSEWADYGVDAYTAACHKSSPYAVPCARPADFPTSQIILPLAHTIKHEEFLEVIQIEGHAFPPDDVALPPDMYLLQLCSGVDKNSIGACAQLVFAPIDETFADDAPLLPSGFRVISLAPKMASHTTRTLDLTSTLEVGSGNNHPAGEPDYSLRSVLTIAFQFTFENHLRDSVASMARQYVRSVVASVQRVAMAIAPPRLGTQLRPSFLPDSPEALTLARWICRSYRIHTGTELFRVESTSGDAILKQLWHHSDAIMCCSVKTNASPVFTFTNQAGLDMLETTLVSLQDIMLDKVLDEAGKKVFCSEFSKIMQQGFAYLPSGICVSSMNRSVSYDEAIAWKVLNEDDSNHCLAFMFMNWSFV 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0179 850 Gene3D - 199 386 IPR023393 -
Lal3g0179 850 MobiDBLite consensus disorder prediction 140 161 - -
Lal3g0179 850 Pfam START domain 175 382 IPR002913 GO:0008289
Lal3g0179 850 MobiDBLite consensus disorder prediction 140 156 - -
Lal3g0179 850 Gene3D - 9 81 - -
Lal3g0179 850 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 850 - -
Lal3g0179 850 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Lal3g0179 850 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 850 IPR044830 GO:0003700
Lal3g0179 850 SMART HOX_1 14 80 IPR001356 GO:0003677
Lal3g0179 850 CDD bZIP 69 105 - -
Lal3g0179 850 SUPERFAMILY Bet v1-like 175 386 - -
Lal3g0179 850 Coils Coil 82 106 - -
Lal3g0179 850 ProSiteProfiles START domain profile. 172 393 IPR002913 GO:0008289
Lal3g0179 850 SUPERFAMILY Homeodomain-like 11 81 IPR009057 -
Lal3g0179 850 CDD START_ArGLABRA2_like 170 385 - -
Lal3g0179 850 Pfam MEKHLA domain 705 849 IPR013978 -
Lal3g0179 850 CDD homeodomain 17 77 IPR001356 GO:0003677
Lal3g0179 850 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Lal3g0179 850 SMART START_1 174 384 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0179 Lal-Chr3 1204377 1209314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0179 14 850 Homeobox Transcription Factor Family AT2G34710 74.645 0.0 1304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal3g0179 START 1.5e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0179 K09338 - gmx:100779499 1420.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0179 3 1204377 1209314 Lal3g0179 3 1204377 1209314 ECH
Lal5g1590 5 18389605 18395151 Lal3g0179 3 1204377 1209314 LSH
Lal3g0179 3 1204377 1209314 Lal11g0321 11 2326174 2331388 LSH