Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0177 ATGTCAGTGGATAATTATCTTGAAAGGCTTGCCTCAGGTAGAAGTAGGCTGAAAGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCCGATTGTAATGGTCCCGATCCTAAATGGGCGTCAGCTAATATTGGAGTTTTTATATGCTTAAAGTGCTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCAGTGACATTAGATGAATGGTCAGATGATGAAATAGATGCAATGATTGAAGTCGGGGGAAACTCCTCTGCTAATTCAATTTATGAGGCTTATATTCCTGAAGGATATACCAAACCCGGACCAGATGCCAGTCCTGCGCAGCGTGCAAAGTTTATACGGTCAAAGTATGAGCATCAAGAATTTTTGAAACCTAGTCTGCGCATTGTTTCTGGAAAAAGCAGTATAGAATCAAGTTCTTCCAAAAGTTTCCTGGATGGTTTTCGAACTAATAGTAGCAGTTCACAGAATATGGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTGGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAATCTTGGCCAACAGACTGTGCAGACATCTGTGATCAGGAGTAACTTGAATCCAGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAGCAATATGGACCACTTAAATTGAAAGTGTTTGATCATGACACATTTTCTGCTGATGATGTAATGGGTGAAGCGGACATTGATCTTCAGCCCCTGATAACATCTGCCACGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGGAAATGGCTGAAATCTAATGACAATGCACTTATTGAAGATAGCACAGTCAATATTGTTGATGGTAAGGTTAAACAAGAGATGACAATCAAACTCCAGAACGTTGAATCTGGAGAATTAGATTTAGAACTCGAATGGATTTCTCTTGATCAATAG 987 0.3941 MSVDNYLERLASGRSRLKDLLLQKDNRFCADCNGPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNSSANSIYEAYIPEGYTKPGPDASPAQRAKFIRSKYEHQEFLKPSLRIVSGKSSIESSSSKSFLDGFRTNSSSSQNMEGMVEFIGMLKVKVIKGTNLAIRDIKSSDPYVVLNLGQQTVQTSVIRSNLNPVWNEEHMLSVPEQYGPLKLKVFDHDTFSADDVMGEADIDLQPLITSATAFGDAGMFGDMQIGKWLKSNDNALIEDSTVNIVDGKVKQEMTIKLQNVESGELDLELEWISLDQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0177 328 SUPERFAMILY ArfGap/RecO-like zinc finger 16 131 IPR037278 -
Lal3g0177 328 ProSiteProfiles C2 domain profile. 155 269 IPR000008 -
Lal3g0177 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 328 IPR044518 GO:0005096|GO:0005543
Lal3g0177 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 9 328 - -
Lal3g0177 328 CDD ArfGap 17 123 - -
Lal3g0177 328 PRINTS HIV Rev interacting protein signature 26 45 IPR001164 GO:0005096
Lal3g0177 328 PRINTS HIV Rev interacting protein signature 45 62 IPR001164 GO:0005096
Lal3g0177 328 PRINTS HIV Rev interacting protein signature 66 87 IPR001164 GO:0005096
Lal3g0177 328 ProSiteProfiles ARF GTPase-activating proteins domain profile. 14 128 IPR001164 GO:0005096
Lal3g0177 328 Pfam C2 domain 173 262 IPR000008 -
Lal3g0177 328 Pfam Putative GTPase activating protein for Arf 16 130 IPR001164 GO:0005096
Lal3g0177 328 SMART C2_3c 173 268 IPR000008 -
Lal3g0177 328 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 168 265 IPR035892 -
Lal3g0177 328 SMART arf_gap_3 14 136 IPR001164 GO:0005096
Lal3g0177 328 CDD C2_ArfGAP 171 315 - -
Lal3g0177 328 Gene3D Arf GTPase activating protein 3 134 IPR038508 -
Lal3g0177 328 Gene3D C2 domain 170 328 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0177 Lal-Chr3 1193111 1197656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0177 7 328 C2H2 Transcription Factor Family AT4G21160 73.939 0.0 513
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0177 3 1193111 1197656 Lal3g0177 3 1193111 1197656 ECH
Lal5g1594 5 18418624 18423032 Lal3g0177 3 1193111 1197656 LSH