Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0172 ATGGCTTCTTCTTCTAGAATTCCTAGTGATGTGAGGGATGTTGAACAAGAAGGACAAAGCTCTCCTGAGAGAAAGAAAGCTAAGGACTCTAATTACCTGCGTCACACTCATGACCAAATAGCCAAACTTGAAGAATTGTTCAAACAGCAACCTACTCCAGATGAAAACCAAAGAGGTGAAATAGCCCAGGAGCTAGGGCTTGAGACAAAACAAATAAAGTTTTGGTTTCAGAATAAGAGGACTCAGAAAAAGGCTGAAATGGAGCGAAAACAAAATGATGCTCTTCGTGCTGAGAATTTTAGGATACGGATGGAGAACTTGATAAAAGTCCACATTAATGAGAAATTATTGGTGATTAAGAAGGCTCATAAAATGGTTGAGATGTACACCGAGAAACCGCGGTCACAATCCGAGTTGCAACTGGACCTTACCCTAGGAATAGGAAGTTCATATGATCCTTCACCAGCAAGTATTCCAAACTTATCAGAAATACAAAGTGTTTCTCCTAATCCAGGTCTTGATTCTGATAAAAATAGAATTCCCAAAGCACAAATGGTAGGTGCTGCAATTGCTGCCAGGGATGAATTAGTTAGGCTTTTATGCACCAATGAGCCCTTATGGATAAAGTCTCCAAATGATGATAGAAGACTAATTCTTCATCCTACATGCTATGAAAGGTTCTTTCCTAGGGTTTCTCCCTTGATCAAAAGCTCCAAAGCTAGAGAAGAATCATCAAAAGGATCAAGAATAGTGGGCATTAATCCCAGGAGATTAATTGACATGATTATGCATTCGGAAACATGGACTCATATTTTTCCAACAATTATTTCTAAAGCTCATACAATCCAAGTGGTTGAGAAGGGTTCATTCGAAAATCGAAGTGGAGCTGTATTACTGATGTACGTGGATATGCATGTTCTTTCACCTTCAGTAGCATCCAGGGAATTCTACTTCCTTCGCTATTGTTCACAAATTGAAAATGGTGTTTGGGTAATCACAGATGTGTCTTTTGATTACTTAGAACAGAAAACAATTCCTTCTTCATGTTGGAGGCTTCCCTCAGGATGTCTAATTAGAGAAATGCCTAATGGTTTTGCTGAGGTTACTTGGGTGGAACATGTTGAAGTGGATGAAAACATCCCAGCACACTCTCTGTACAAAGATGTTGTTAGCACAAGTATTGCATATGGTGCAGAAAGATGGCTTTCTGAACTTTCAAGAATGTCTTACAGACTTTCCAGCTTCATGCCTAACTACATACCTTCTGATGATGCTGGTGCAGTAATCAATGTACCTGAAGGGAGAAAAAGTCTCATTAAGCTTTCTCACCGAATGATGAAAAACTTCACAGAAATGCTAAATATGTCAAAGAGAGGTTCACAACAAATTATAATGAGTTCTGGGGTTTGGATTTCTGTGAAAGAGAACATAAAATATGGCCATGAAAATGCAAAGAGTTTGGTTGTAGCAACATCTTTTTGGGTCCCAAACCATTCGAAGGATATTATTAACTTTTTCATAAGTGCAGAAAAACGTGCTCAGTGGGATTTTCATTCTTCAGAAAATAGTCAACTACTTGAGATTTGTCGCATTTCTAACAGACCTCAATCTGCAAACTTTATATCAGTGTTTCAGGAAATAAAACTTGCTGAGCCAAGGGAACGTACACTGATAATTCAAGAAACATTTATGACCCGTTTGGGATCATATATTGTATATGCTCCAATTAATGTGGATGATTTATCTATGACTATAAGGGGTCATGATTCATCAAAGGTATTTCTTCTACCATCTGGTATCACAATTTCTGAATTACCTGAACCTAGTGTTGAAGAAGCATCTAGTAGTAGAAATCATGGTGCAACAAAAGGGTCATTGATTACTGTAGCTTTGCAAATTGAGATATCATCAGCTGCTATAAATTCAGATTCAGTGGAAGCTGCAAAAGCACTAGTTATATCAACTATGCTGAAGATTAAGGATGGTTTGAATTTCTGTGATTTGGTGTGA 2010 0.3791 MASSSRIPSDVRDVEQEGQSSPERKKAKDSNYLRHTHDQIAKLEELFKQQPTPDENQRGEIAQELGLETKQIKFWFQNKRTQKKAEMERKQNDALRAENFRIRMENLIKVHINEKLLVIKKAHKMVEMYTEKPRSQSELQLDLTLGIGSSYDPSPASIPNLSEIQSVSPNPGLDSDKNRIPKAQMVGAAIAARDELVRLLCTNEPLWIKSPNDDRRLILHPTCYERFFPRVSPLIKSSKAREESSKGSRIVGINPRRLIDMIMHSETWTHIFPTIISKAHTIQVVEKGSFENRSGAVLLMYVDMHVLSPSVASREFYFLRYCSQIENGVWVITDVSFDYLEQKTIPSSCWRLPSGCLIREMPNGFAEVTWVEHVEVDENIPAHSLYKDVVSTSIAYGAERWLSELSRMSYRLSSFMPNYIPSDDAGAVINVPEGRKSLIKLSHRMMKNFTEMLNMSKRGSQQIIMSSGVWISVKENIKYGHENAKSLVVATSFWVPNHSKDIINFFISAEKRAQWDFHSSENSQLLEICRISNRPQSANFISVFQEIKLAEPRERTLIIQETFMTRLGSYIVYAPINVDDLSMTIRGHDSSKVFLLPSGITISELPEPSVEEASSSRNHGATKGSLITVALQIEISSAAINSDSVEAAKALVISTMLKIKDGLNFCDLV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0172 669 SUPERFAMILY Bet v1-like 182 408 - -
Lal3g0172 669 ProSiteProfiles START domain profile. 178 414 IPR002913 GO:0008289
Lal3g0172 669 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 24 665 - -
Lal3g0172 669 CDD homeodomain 34 84 IPR001356 GO:0003677
Lal3g0172 669 Gene3D - 234 406 IPR023393 -
Lal3g0172 669 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 665 IPR042160 -
Lal3g0172 669 SMART START_1 187 411 IPR002913 GO:0008289
Lal3g0172 669 CDD START_ArGLABRA2_like 182 409 - -
Lal3g0172 669 Coils Coil 78 98 - -
Lal3g0172 669 SMART HOX_1 28 90 IPR001356 GO:0003677
Lal3g0172 669 MobiDBLite consensus disorder prediction 10 34 - -
Lal3g0172 669 SUPERFAMILY Bet v1-like 431 636 - -
Lal3g0172 669 MobiDBLite consensus disorder prediction 1 34 - -
Lal3g0172 669 Pfam START domain 190 406 IPR002913 GO:0008289
Lal3g0172 669 Gene3D - 12 101 - -
Lal3g0172 669 ProSiteProfiles 'Homeobox' domain profile. 26 86 IPR001356 GO:0003677
Lal3g0172 669 Pfam Homeodomain 34 84 IPR001356 GO:0003677
Lal3g0172 669 ProSitePatterns 'Homeobox' domain signature. 61 84 IPR017970 GO:0000981|GO:0006355
Lal3g0172 669 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0172 Lal-Chr3 1137509 1142354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0172 23 663 Homeobox Transcription Factor Family AT1G73360 38.340 4.37e-137 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal3g0172 START 1.5e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0172 K09338 - gmx:100795075 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1602 5 18489981 18494144 Lal3g0172 3 1137509 1142354 LSH