Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0160 ATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAAGAAGCAGCATTGAAAGCTGGAGTTGTTAAGCATGGGGTTGGTAAATGGCGTACAATACTCAAGGATCCAGAGTTTAGTGGTGTCTTATATTTACGTTCAAATGTGGATCTCAAGGATAAATGGAGAAATTTGAGTGTGATGGCAAATGGATGGACCTCCAGAGAGAAATCTAGGTTAGCAGTCAAAAGGGTGCATCAGACCCCAAGACAGGATGAGAACTCCTTGGCTATCATTCCTGTAATTCCGAGTGATGAAGAAATTGCCGATGATAAGCCTTTTCAACTTTCTAAAGATATGATGCAGCACCCTGGTCCGAAAAGGTCTATAGTAAGGTTGGATAACCTTATAGTTGAAGCAATAACTACCTTGAAGGAGAATGGTGGTTCTAATAAGACAACTATCGCCTCTTTCATAGAGGATCAATATTGGGCACCACCAGACTTCAAAAGGTTGCTGTCATCGAAATTAAAGTTTTTGACAGCAAGTGGAACACTGATCAAGGTAAAACGCAGGTACAGGATTGCTCCTACTTCAGCATATTCTGACAGAAGAAGAAACTCACCCATGTTATTATCAGATGGCAGGCAGAAAGCCTCTATGAAAATTGACAGGGATGAGATCAATGTCCTCACAAAGTCTCAGATAGATTTAGAGTTAGCAAAGATAAGGTCCATGACTCCGCAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTTCTGAAGCAGAAGCTGCCATAGCAGAAGCCGAAGAGGCAGCAAGGGAAGCAGAGGCAGCAGAAGCTGATGCAGATGCAGCAGAAGCTTTTGCAGAAGCTGCAATGAAAACAATGAAAGGGAGAAACACCCTAAAGACGATGATCCCTGCTTGA 903 0.4341 MGAPKQKWTSEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWTSREKSRLAVKRVHQTPRQDENSLAIIPVIPSDEEIADDKPFQLSKDMMQHPGPKRSIVRLDNLIVEAITTLKENGGSNKTTIASFIEDQYWAPPDFKRLLSSKLKFLTASGTLIKVKRRYRIAPTSAYSDRRRNSPMLLSDGRQKASMKIDRDEINVLTKSQIDLELAKIRSMTPQEAAAVAARAVSEAEAAIAEAEEAAREAEAAEADADAAEAFAEAAMKTMKGRNTLKTMIPA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0160 300 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal3g0160 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lal3g0160 300 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Lal3g0160 300 Gene3D - 118 197 IPR036388 -
Lal3g0160 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal3g0160 300 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lal3g0160 300 SMART sant 4 59 IPR001005 -
Lal3g0160 300 PANTHER SINGLE MYB HISTONE 4 1 296 IPR044597 GO:0003691
Lal3g0160 300 SUPERFAMILY "Winged helix" DNA-binding domain 117 197 IPR036390 -
Lal3g0160 300 Gene3D - 2 59 - -
Lal3g0160 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lal3g0160 300 Coils Coil 243 280 - -
Lal3g0160 300 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal3g0160 300 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 296 - -
Lal3g0160 300 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0160 Lal-Chr3 1061889 1065820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0160 1 300 Single Myb Histone (SMH) Gene Family AT1G49950 65.574 1.91e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal3g0160 Linker_histone 8.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0160 K09422 - gmx:100780698 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0160 3 1061889 1065820 Lal11g0302 11 2157116 2161535 LSH