Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0158 ATGTGCAGCATCTTTGTTTCAACCATGGACAATTACCAAGGTGATTTAACTGACATAGTTCGTGCTAGTAGTGGTGGAGCATATAGCACCACCACCACAACTTCTTCTTCATTATCAAAAGCTGCAACTAATAATCAATTTTCTCATCACCATCACTGGCAGCAGCACCATTTTCCTTCTGATCCTATCAATTTCTCTTCTTCTGTTTTGGAAGAAGGTACCAACTTTGGTGATCCGTTCTCAACTTTATTGAGAGATCCATTATCAACTATGAGAGTCCCCTTCTTACACGAGCTTGATTTTATGCCTAATTCAGGGAATAATTCTTCACCCTACTTCAACAATACCGCTACAATAACAGCAGCAACTTCTTCTGCTGAAAATATCATAAGCACTTCCTGTGGTGCTTTGGAACATGCAGCACCTGCAACTTTTGGTGCTAGTACTATTACTAATACTAATAGTGCTACTTCTGTTTTTGCACACAAAATTCTTGAAGATGACAGCATCATGAGATCTTCAAGGCCTTCTTCTAAGAGCATATTCTCAAACATGATTCAAATCTCTCCAAATGCTGCAAAGTTACCTCTCTCGCAGTATGATTCTACTTCTCCGGTCATGGGTGCTTCTGCAATGGTTTCAGGCAACATGATTAATGCAACAAACACCTCCAAGGATTGCCTTGTTGACAACACAGGAGGAGTGCAGATCTCATCTCCACGGAATCCGGGTCTTAAAAGAAGAAAGAACCAGGCGAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAATAGCAGACAAACTGGAGAAGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATACGGTCAGAAACCCATCAAAGGTTCACCCTATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTTCAGCAAGGAAACAAGTTGAGAGGAGCAGAACAGACCCAAACATGTTGGTCATTACTTACACTTCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCATCAAGATCCCAACCATCCAAGAACAACAACAACAACAACAATGCTTCTACTTCAAAGAATTCAGAAACCTCTCACAAGGGCACAACAACAACAACAACAACAAAGCCAAAGGATGAGGAACAAGAGAGCAACAATAGTGAAGGCAATGTGTCAGTGAAGGAAGAGATAGAAATGGAAGACATAGAGAAGCAGCTTGAGATGGATGATGTTGAATTCAGTGATGGACTCTCTTACAAGCCATCTATGTTGGACAATATTAGCAACAATAGTCAATCTCATGAAGACTTCTTTGCAGAATTGGGGGAAATAGAAACTGACCCACTAAACCTATTGTTTACTCAAGATTTTAATGATCAAAGGGAATCCAAGGCCTTAGATCCATTCCATCTCTTTGACTGGTCAGGAAGAGACACCAACAACAACAACAACTCATTTGAAGAATCTAGTAATAGTAAGAGAAGGTTATAA 1500 0.4087 MCSIFVSTMDNYQGDLTDIVRASSGGAYSTTTTTSSSLSKAATNNQFSHHHHWQQHHFPSDPINFSSSVLEEGTNFGDPFSTLLRDPLSTMRVPFLHELDFMPNSGNNSSPYFNNTATITAATSSAENIISTSCGALEHAAPATFGASTITNTNSATSVFAHKILEDDSIMRSSRPSSKSIFSNMIQISPNAAKLPLSQYDSTSPVMGASAMVSGNMINATNTSKDCLVDNTGGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQPSKNNNNNNNASTSKNSETSHKGTTTTTTTKPKDEEQESNNSEGNVSVKEEIEMEDIEKQLEMDDVEFSDGLSYKPSMLDNISNNSQSHEDFFAELGEIETDPLNLLFTQDFNDQRESKALDPFHLFDWSGRDTNNNNNSFEESSNSKRRL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0158 499 MobiDBLite consensus disorder prediction 318 375 - -
Lal3g0158 499 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 13 480 - -
Lal3g0158 499 MobiDBLite consensus disorder prediction 479 499 - -
Lal3g0158 499 Pfam WRKY DNA -binding domain 276 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal3g0158 499 ProSiteProfiles WRKY domain profile. 269 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal3g0158 499 MobiDBLite consensus disorder prediction 291 399 - -
Lal3g0158 499 Gene3D WRKY domain 248 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal3g0158 499 SUPERFAMILY WRKY DNA-binding domain 272 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal3g0158 499 SMART WRKY_cls 274 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal3g0158 499 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 480 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0158 Lal-Chr3 1041560 1046117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0158 1 458 WRKY Transcription Factor Family AT2G34830 42.292 2.18e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal3g0158 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0158 - - aprc:113852911 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0158 3 1041560 1046117 Lal3g0158 3 1041560 1046117 ECH
Lal5g1626 5 18648976 18653429 Lal3g0158 3 1041560 1046117 LSH
Lal3g0158 3 1041560 1046117 Lal11g0299 11 2135181 2138794 LSH