Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0151 ATGGATGTAAAAGGAGGAGTACTAAGCAACCAAAGCACGATGATCCAAAGTGAAGAGGAAGATATGGACCTTCGAAGAGGACCTTGGACTGTGGATGAAGACCTTGCTCTCATCAATTACATTGCCAATCATGGTGAAGGTCGATGGAACTCCCTTGCTCATTCTGCTGGACTCAAACGAACCGGCAAGAGCTGCAGATTGAGATGGTTGAATTATTTACGTCCTGATGTTCGACGTGGTAACATCACACTTGAAGAACAACTTCTTATTCTCGAGCTCCATGCTCGCTGGGGAAATCGGTGGTCCAAAATTGCTCAATATTTACCAGGAAGAACAGACAACGAGATCAAGAACTATTGGAGAACTCGAGTTCAAAAGCATGCCAAACAACTTAAATGTGATGTGAATAGCAAACAATTCAAGGATGCCATGCGCTATCTTTGGATGCCAAGGCTGGTAGAGCGCATCCAAGCCGCCGCAACAACCACCGCAACTACTGATTCTTCAACCCCATCTGCCATTACTAGAAATGTCACCAACAACAACAACAACAATATCACATACAACAACCTTAACAATAACAATTTTGAGGTTCATAGTGGAGGGAACATGATGTTTTCTCCATCAATTATGAACAACAACTTTGGTTGTTCACAAGTTAAACAAAGTTATACCACTGAGAATAGTAGTGCTGGAACCTCATCAGACTCTTTTGGAACCTATGTCTCACCGGTTTCAGACTTAAATCATGATTATTACAACGTACTACTTGATAGTAGCAACAATAACCCTAATCTTGGTTACTATCAACAAGATCATCAAGGAAACTTCTTTGATTGCATCACAAGCCCATCAGGTTTGTGCTCTCAAGAGATGGATTTCCAAGCCATGGAACCAAACAACCAGTGGATTCAGAATGAGGACACATCCAACAATTTCTGGAGTTTTGAAAATATGTTACAACAATTTAATGACAGCATGTGA 984 0.4116 MDVKGGVLSNQSTMIQSEEEDMDLRRGPWTVDEDLALINYIANHGEGRWNSLAHSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHARWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAATTTATTDSSTPSAITRNVTNNNNNNITYNNLNNNNFEVHSGGNMMFSPSIMNNNFGCSQVKQSYTTENSSAGTSSDSFGTYVSPVSDLNHDYYNVLLDSSNNNPNLGYYQQDHQGNFFDCITSPSGLCSQEMDFQAMEPNNQWIQNEDTSNNFWSFENMLQQFNDSM 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0151 327 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Lal3g0151 327 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Lal3g0151 327 CDD SANT 28 73 IPR001005 -
Lal3g0151 327 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Lal3g0151 327 Gene3D - 83 146 - -
Lal3g0151 327 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 320 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal3g0151 327 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Lal3g0151 327 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Lal3g0151 327 Gene3D - 23 79 - -
Lal3g0151 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Lal3g0151 327 CDD SANT 94 122 IPR001005 -
Lal3g0151 327 SMART sant 25 75 IPR001005 -
Lal3g0151 327 SMART sant 78 126 IPR001005 -
Lal3g0151 327 PANTHER MYB TRANSCRIPTION FACTOR 1 320 - -
Lal3g0151 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 77 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0151 Lal-Chr3 957980 960367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0151 22 171 MYB Transcription Factor Family AT1G48000 74.000 2.12e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal3g0151 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0151 K09422 - gmx:100805341 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1643 5 18758454 18760741 Lal3g0151 3 957980 960367 LSH