Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0149 ATGTCTTACTCCCATTTGGAGAAGGGTGCTTCCGTGGAGGTTACAAAACTCAACACCACCCTTTTCTACCCAGCCACCGTCCTCCGACCACCTTCAAACACCAACAACCTCGTTTTTGTCGAGTACCTCAACCTCTTCAGGGAATACGTTAATGTCTCCAACGTGCGTCCCAAGCTTCCCCAAAACCTCAATCACTGTTTTAAGGTTGGGGATTCCGTTGACGTATATACCCATTCAACCAAAGCTTGGTGCCCTTCTACCATTATACACATTCTTCAGAGTTCTAAGTATACGGTGTCGTTTCATGTTCTTAACAATAATCACGCTAAATACGCCATTGTTGATCACTCTTGCCTTAGAATTCATCGTCAATGGGTTTATGGCAATTGGGTCCCAGCTTTTCCTCTCGATCAAAAGGAGCAGCCACCTGAGATGGTGAAAAGGCCTGAAAATTTCAGAGTTAGGATCAAATATAGCAGGAGACCAATACAGGAGTCGAAGTTTAAAAAAGGGGGAACAGTGGAAGTCACAAATGGTGATGAAGGATATAAGGGTGCTTGGTTTGTTGCTACTATTGTTGACTTAATTGGAAAAAACAGGTTTCTGATAGAATATAAGGACCTGACAACAGATGATGGAACCCAGCTATTGAAAGTAGAAACTGATGCACTGTATATTAGGCCTTGCCCCCTGAAAGTTCCAAATGAGGGTTCTTTCAAACAGTTTCAAGAAGTTGATGCGTGGTACAATGATGGGTGGTGGGAAGGCGTGATTCTTAAAGTACTAAATAGCAGTGAGTGTTATGTTTCTTTCATTCACAATGATGTATTGAAATTTGATATATCTAAACTACGGCCTCACCAGGATTGGTTGGATGGAAAATGGGTCATATCCTCCAAGAACTCAGGTGAGCTGGCAATGAAGTTTGGAGATGTGATGTCAAAAGCCAAGAATCTCGGCGGAAATAAATTAATCTTGAAATTTCATAGGTCTAGAGAGCTTTCAAAGAAGCCTGAGGATGTCACATCAAGGACCAAGAAGACCAGAAGCCAATATGTGCTGCCATTCTGTAAAGGTGCAAAGGTAGAAGTCAGAAGTGATGAAGAAGGCTATGAAGGTGCCTGGTATAGTGCCATTGTTTTTGACTCTTTGCTGAATGGCAAGTATTTGGTGGAGTATTTGACCCTGAAAACAGATGACTTAACTGAACAACTGAAAGAAGAGGCAAATGCTTCAGATATCAGGCCACATCCACCAGAAATCAATCATTGTCATCACTTTGCACTGCACGAAAGAATTGATGCTTGGTATAATGAAGGGTGGTGGGTAGGCCAGGTATCCAGCATTCTCCGTGGCTTCAAGTATAGGGTTTACTTTTGGCATACAAAAGAGGAGCTGGAATTTGAACATTGTCATCTGAGGCCTCATCAAGAATGGATTGATGGGAGATGGGTAATTTCTTCACTGGTATGA 1473 0.4229 MSYSHLEKGASVEVTKLNTTLFYPATVLRPPSNTNNLVFVEYLNLFREYVNVSNVRPKLPQNLNHCFKVGDSVDVYTHSTKAWCPSTIIHILQSSKYTVSFHVLNNNHAKYAIVDHSCLRIHRQWVYGNWVPAFPLDQKEQPPEMVKRPENFRVRIKYSRRPIQESKFKKGGTVEVTNGDEGYKGAWFVATIVDLIGKNRFLIEYKDLTTDDGTQLLKVETDALYIRPCPLKVPNEGSFKQFQEVDAWYNDGWWEGVILKVLNSSECYVSFIHNDVLKFDISKLRPHQDWLDGKWVISSKNSGELAMKFGDVMSKAKNLGGNKLILKFHRSRELSKKPEDVTSRTKKTRSQYVLPFCKGAKVEVRSDEEGYEGAWYSAIVFDSLLNGKYLVEYLTLKTDDLTEQLKEEANASDIRPHPPEINHCHHFALHERIDAWYNEGWWVGQVSSILRGFKYRVYFWHTKEELEFEHCHLRPHQEWIDGRWVISSLV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0149 490 Pfam Agenet domain 359 419 IPR008395 -
Lal3g0149 490 Pfam Agenet domain 173 230 IPR008395 -
Lal3g0149 490 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 119 490 - -
Lal3g0149 490 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 6 230 - -
Lal3g0149 490 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 6 230 - -
Lal3g0149 490 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 119 490 - -
Lal3g0149 490 SMART agenet_At_2 166 234 IPR014002 -
Lal3g0149 490 SMART agenet_At_2 237 292 IPR014002 -
Lal3g0149 490 SMART agenet_At_2 354 422 IPR014002 -
Lal3g0149 490 SMART agenet_At_2 425 481 IPR014002 -
Lal3g0149 490 SMART agenet_At_2 4 63 IPR014002 -
Lal3g0149 490 SMART agenet_At_2 65 127 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0149 Lal-Chr3 935461 940053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0149 365 479 PHD Transcription Factor Family AT5G58610 27.407 1.33e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0149 - - adu:107483399 565.844