Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0141 ATGGCACCATCTCTTGTCTCAAAAAATTCACCACAAACCAGTGTTACAGATCAATCACATGACTCCTACATGCAAAACAAGAAAAAGAAGAAACCTCCAAAACATCGAAATCAACAGAACCAAGAATGGAATTCACAAAAGCAGCAACAACTATACTCTTCCAAGCTCCGCCAAGCGCTGACAAGAGTCAACCTCACCGGCGGGAAAGAAGTCCGGGAAGCTGCCGACAGGGTCCTCGCCGTCACGGCTAAGGGGAGGACACGGTGGAGCCGAGACATTCTCGCAAACCGAGTCAAGCTTAAGTTCAGGAAGAAACAGACCCGGTTCAGCGTGCTCCGATTAAAAGGGAAAACGGTTCCATGTTTTCAGAGAAAAGTGAAGGTTCTTGGCCGGTTGGTTCCGGGTTGCAGAAAAGAATCGTTGGCGGTTATTTTAGAAGAAGCTATTGATTATATACCTGCTCTTGAGATGCAGGTTCGAGCCATGACCACTCTCTCACAATTACTATTTCGCTCTTCTTCTGGTGGCGCCGCCTCTAGCTCCGTCACTTCTGGCCCAATATGA 564 0.4787 MAPSLVSKNSPQTSVTDQSHDSYMQNKKKKKPPKHRNQQNQEWNSQKQQQLYSSKLRQALTRVNLTGGKEVREAADRVLAVTAKGRTRWSRDILANRVKLKFRKKQTRFSVLRLKGKTVPCFQRKVKVLGRLVPGCRKESLAVILEEAIDYIPALEMQVRAMTTLSQLLFRSSSGGAASSSVTSGPI 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0141 187 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 24 182 IPR044660 GO:0006355
Lal3g0141 187 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 24 182 - -
Lal3g0141 187 MobiDBLite consensus disorder prediction 1 21 - -
Lal3g0141 187 MobiDBLite consensus disorder prediction 1 48 - -
Lal3g0141 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 171 IPR036638 GO:0046983
Lal3g0141 187 CDD bHLH_AtIBH1_like 111 165 IPR044549 GO:0006355
Lal3g0141 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 155 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0141 Lal-Chr3 907837 908400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0141 43 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 53.488 1.60e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0141 - - gmx:100786088 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1652 5 18824855 18825472 Lal3g0141 3 907837 908400 LSH
Lal3g0141 3 907837 908400 Lal11g0279 11 1972514 1973146 LSH
Lal14g1584 14 16382210 16382824 Lal3g0141 3 907837 908400 PCT
Lal7g0980 7 16076439 16077038 Lal3g0141 3 907837 908400 PCT
Lal3g0141 3 907837 908400 Lal14g1584 14 16382210 16382824 PCT
Lal3g0141 3 907837 908400 Lal7g0980 7 16076439 16077038 PCT