Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0140 ATGTCTTCTTTATCATATTTGCATGCTTCAACATTCATAGTTGAAATAGCTCTCATTTTCACCTTGTGCTCTATGCCATGTAGTGCTCTTGGAACTGATGCAAAAACAGTCATAGACTCTCCTTTGTTAACACAAAGGTTAGGAATTAATCACACTATCAAAGTAGATATCAATGGAAAAGGGGACTTCAAATCTGTCCAAGCTGCCATTGATTCCATTCCTGAAGGGAATTCTAATTGGGTTATTGTCCATGTTCGGAAAGGAGTATACAGAGAAAAGGTGCACATACCAAAGACTAAGCCTTATATATTCATGAGAGGGAATGGGAAAGGAAAAACTTCCATTGTTTGGTCACAGAGTTCTGAGGACAATGTGGCTTCTGCTACCTTCAAAGCTGAAGCCAAAGACTTCATTGCCTTTGGAATTAGCTTCAAGAATGAGGCACCTACAGGGGTTGCATATACCTCACAGAATCAATCAGTGGCAGCATTTGTAGCAGCAGACAAAATAGCATTCTACCACTGTGCATTTTATAGTACTCATAATACACTATTTGATTACAAAGGTAGACATTACTATGAGTCCTGTTACATTCAAGGCTCAATTGATTTCATATTTGGCCGTGGCAGATCAATGTTCTATGGTTGTGAGATGTTTGTGATTGCTGATGAAAGGGTAAAAATTCATGGGTCAGTCGTAGCTCAACATAGAGAAAAAGAAGCTGAGATTAGTGGGTTCATTTTTATCAAAGGCAAGGTCTATGGCATTGGTGGGGTGTACTTAGGAAGGGCTAAAGGTCCTTTTTCTAGGGTCATTTTCGCAAACACATACCTCTCCAAGACCATTGTGTCAGAGGGCTGGACCAACTGGAGCTATGATGGAAGCACACAAAATCTATTAATGGCTGAAAACAAGACTCATGGACCTGGAGCCACTGTAGAAGGACGTGTTCCTTGGTCAAGGCAACTTACTGAGAAAGAAGTTGCACCCTATTTGTCTATTGATTACATTGATGGCAAGAATTGGTTGCCAGCATATTGGCAATAA 1047 0.4021 MSSLSYLHASTFIVEIALIFTLCSMPCSALGTDAKTVIDSPLLTQRLGINHTIKVDINGKGDFKSVQAAIDSIPEGNSNWVIVHVRKGVYREKVHIPKTKPYIFMRGNGKGKTSIVWSQSSEDNVASATFKAEAKDFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKIAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRSMFYGCEMFVIADERVKIHGSVVAQHREKEAEISGFIFIKGKVYGIGGVYLGRAKGPFSRVIFANTYLSKTIVSEGWTNWSYDGSTQNLLMAENKTHGPGATVEGRVPWSRQLTEKEVAPYLSIDYIDGKNWLPAYWQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0140 348 PANTHER PECTINESTERASE 67-RELATED 14 347 - -
Lal3g0140 348 SUPERFAMILY Pectin lyase-like 49 346 IPR011050 -
Lal3g0140 348 Pfam Pectinesterase 54 339 IPR000070 GO:0030599|GO:0042545
Lal3g0140 348 Gene3D - 47 347 IPR012334 -
Lal3g0140 348 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Lal3g0140 348 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0140 Lal-Chr3 904518 905973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0140 53 343 Carbohydrate Esterase AT5G47500 37.542 2.26e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0140 - - gmx:100792967 558.525