Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0124 ATGTCGCTGCGGCCCAATGCCAGGACTGAGGGACGCCGCAACCGCTACAAGGTGGCCGTAGACGCCGATGAGGGTCGCCGGAGGAGGGAGGATAACATGGTGGAGATCCGAAAGAACAAGCGCGAAGAGAGCCTCCAGAAGAAGCGTCGTGAAGGTCTCCAACCTCAGCTCCAGTTCCAAGCTCCTCTTCAGGCTTCCACCATTGTTGACAAAAAGTTAGAGAGTCTTCCTGCGATGATTGCTGGGGTTTGGTCTGAAGATAACACTCAGCAACTAGAAGCAACTACGCAATTTCGGAAGCTTCTCTCAATTGAGCGCAGCCCTCCAATTGAGGAAGTTATTCAATCTGGTGTTGTGCCGCGCTTTGTTCAATTTCTCGGTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCATGGGCTCTCACAAACATAGCATCTGGAACTTCTGAGAACACTAAAGTAGTGATTGATCACGGAGCAATCCCAATATTTGTCAAGCTACTTAGTTCACCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCATTGGGAAATGTTGCTGGTGACTCCCCTAAGTGCCGTGATCTTGTTCTTGGCCATGGTGCCTTGATCCCACTATTATCCCAGTTGAATGAGCATTCAAAACTTTCAATGCTGAGAAATGCCACATGGACTCTGTCAAATTTTTGCAGGGGCAAGCCACAACCTCCATTTGAGCAGGTGAGGCCAGCACTTCCAGCTCTTGAGCGTTTGGTTCATTCCAATGATGAAGAGGTTATAACAGATGCATGCTGGGCACTATCATATCTTTCTGACGGAACAAATGACAAAATCCAAGCAGTTATTGAAGCAGGTGTATGTACCCGATTGGTGGAGCTCCTTCTGCATCCGTCTCCTTCAGTGCTGATTCCTGCTCTTCGCACAGTGGGAAATATTGTGACAGGAGACGATATGCAGACCCAGGTTGTTATTGAGTCTGGTCTGATTGCTCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTCGACATTAAAAAGGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGTACTCATGAGCAGATCAAGTATTTGGTTAGCCAAGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTTTGCCCTGACCCAAGAATAGTCACTGTCTGTTTAGAAGGCCTTGAGAATATTCTGAAGGTTGGGGAATCTGAGAAGAGTTTGGGTAACACTGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCTGAGGGATTAGAGAAAATTGAAAACTTGCAGAGTCATGACAACAATGAAATATATGAGAAGGCTGTTAAAATTCTTGAAACATACTGGGTGGAAGATGAGGAAGAGACACTACCTCCAGGTGATAATGCTCAAGGTGGTTTCAATTTTGGAAGCAACGAGCTTCCAGTCCCATCTGGTGGATTCAACTTCAGTTGA 1467 0.4676 MSLRPNARTEGRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQPQLQFQAPLQASTIVDKKLESLPAMIAGVWSEDNTQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLGREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLGHGALIPLLSQLNEHSKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSNDEEVITDACWALSYLSDGTNDKIQAVIEAGVCTRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVVIESGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGESEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWVEDEEETLPPGDNAQGGFNFGSNELPVPSGGFNFS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0124 488 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Lal3g0124 488 MobiDBLite consensus disorder prediction 8 24 - -
Lal3g0124 488 MobiDBLite consensus disorder prediction 465 488 - -
Lal3g0124 488 Pfam Atypical Arm repeat 415 459 IPR032413 -
Lal3g0124 488 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Lal3g0124 488 SUPERFAMILY ARM repeat 5 459 IPR016024 -
Lal3g0124 488 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Lal3g0124 488 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Lal3g0124 488 Pfam Armadillo/beta-catenin-like repeat 318 356 IPR000225 GO:0005515
Lal3g0124 488 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Lal3g0124 488 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Lal3g0124 488 Pfam Armadillo/beta-catenin-like repeat 361 398 IPR000225 GO:0005515
Lal3g0124 488 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Lal3g0124 488 PIRSF Importin_alpha 2 337 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lal3g0124 488 PIRSF Importin_alpha 324 487 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lal3g0124 488 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Lal3g0124 488 SMART arm_5 360 400 IPR000225 GO:0005515
Lal3g0124 488 SMART arm_5 149 189 IPR000225 GO:0005515
Lal3g0124 488 SMART arm_5 234 273 IPR000225 GO:0005515
Lal3g0124 488 SMART arm_5 106 147 IPR000225 GO:0005515
Lal3g0124 488 SMART arm_5 275 315 IPR000225 GO:0005515
Lal3g0124 488 SMART arm_5 317 357 IPR000225 GO:0005515
Lal3g0124 488 SMART arm_5 191 232 IPR000225 GO:0005515
Lal3g0124 488 MobiDBLite consensus disorder prediction 1 24 - -
Lal3g0124 488 MobiDBLite consensus disorder prediction 469 488 - -
Lal3g0124 488 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 356 IPR000225 GO:0005515
Lal3g0124 488 Pfam Importin beta binding domain 12 96 IPR002652 GO:0006606|GO:0061608
Lal3g0124 488 Gene3D - 11 50 IPR036975 GO:0006606
Lal3g0124 488 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Lal3g0124 488 PANTHER IMPORTIN ALPHA 322 479 - -
Lal3g0124 488 PANTHER IMPORTIN ALPHA 2 328 - -
Lal3g0124 488 PANTHER IMPORTIN SUBUNIT ALPHA 322 479 - -
Lal3g0124 488 PANTHER IMPORTIN SUBUNIT ALPHA 2 328 - -
Lal3g0124 488 Gene3D - 74 454 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0124 Lal-Chr3 783505 787084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0124 132 406 U-box Gene Family AT3G46510 25.091 4.86e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0124 K15042 - gmx:100808498 816.224