Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0117 ATGGTACTTTTTCCATCTTTTGTCAATGGAATTGTGAAAAATGTGTCATTGAAGAAAGAGAAGAGTTGTAAAAAGGATGATGGAAGGAAAGAAGTGGAAGAATTGGCAAAGGAAGCAAGGAAGAATGAGTTGTTGTTAAGTTCATCTGGAATTGTTAAATCAGCCAAGACCAACAATTTTGCCTCTGTTTTCACTAGCAAGGGCCAGAAAGGAGTTAATCAGGATCACCTTCTTGTTTGGGAGGAATTTGGGTGCCAAGAAGACATGATCTTCTGTGGAATTTTTGATGGGCATGGCCCTTGGGGACACTTTGTGGCTAAAAGGGTCAGGAAACTAGTACCAGCTTCTTTACTAAGCAATTGGCAGGAAAATCTGGTTGCAACATCACTTAACCTGGATTTTAAGATGGAAGAAGATAAAAACCTCCATAGATTTAACATATGGAAGCAGTCCTACATAAAAACTTGTGCCGCAGTTGATGAAGATCTAAAGCAGCATACTGGAATTGATGCCTTTCAAAGTGGTTCTACAGCTTTGACAATTATCAAACAGGGTGAACATCTGATTATAGCAAATGTGGGGGATTCAAGGGCTGTTTTGGCAACCACTTCAATAGATGGCACATTAATTTCTCTTCAGCTTACAACTGACATGAAGCCAAACTTACCAAAAGAGGCAGAACGCATAATGCAATCAAGAGGGCGTGTATTTTGTATGGAAGATGAACCAGGAGTGTATAGGGTGTGGATGCCAAATGGTAAAACCCCAGGGCTAGCATTATCAAGAGCATTTGGTGATTACTGTGTTAAGGACTTTGGACTAATCTCTGTGCCAGATGTCACACAAAGAAAACTCACCACCACTGACCAATTTGTAATCTTAGCATCAGATGGGGTATGGGATGTTATGTCCAATGAAGAAGCAGTGAAGATTGTGTCATCAACACTACATAAAGAGAAAGCAGCCAAAAAGCTAGTGAAATGGGCCATGCATGAATGGAAACGTAAGAAAAGAGGCATTGCTATTGATGATATTTCAGCTATTTGTCTCTTCTTTCACTCTCCCTCCACTCATCAACTCCATATGAATAAGAATGGTGGATGA 1104 0.4013 MVLFPSFVNGIVKNVSLKKEKSCKKDDGRKEVEELAKEARKNELLLSSSGIVKSAKTNNFASVFTSKGQKGVNQDHLLVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRKLVPASLLSNWQENLVATSLNLDFKMEEDKNLHRFNIWKQSYIKTCAAVDEDLKQHTGIDAFQSGSTALTIIKQGEHLIIANVGDSRAVLATTSIDGTLISLQLTTDMKPNLPKEAERIMQSRGRVFCMEDEPGVYRVWMPNGKTPGLALSRAFGDYCVKDFGLISVPDVTQRKLTTTDQFVILASDGVWDVMSNEEAVKIVSSTLHKEKAAKKLVKWAMHEWKRKKRGIAIDDISAICLFFHSPSTHQLHMNKNGG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0117 367 CDD PP2Cc 59 352 IPR001932 -
Lal3g0117 367 Gene3D - 47 354 IPR036457 -
Lal3g0117 367 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
Lal3g0117 367 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 1 363 - -
Lal3g0117 367 Pfam Protein phosphatase 2C 84 331 IPR001932 -
Lal3g0117 367 SUPERFAMILY PP2C-like 55 354 IPR036457 -
Lal3g0117 367 Coils Coil 18 38 - -
Lal3g0117 367 SMART PP2C_4 51 350 IPR001932 -
Lal3g0117 367 PANTHER ALPHABET, ISOFORM E-RELATED 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0117 Lal-Chr3 734138 737244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0117 4 353 PP2C-type Phosphatase Gene Family AT3G05640 60.227 1.19e-164 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0117 - - gmx:100814087 619.002