Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0099 ATGGGCTTGATTGATCTTAATACCACAGAGGATGATGAAACTCTATCATCTTCTTCTTCTTCCTCTCACTCTGGCATAAGCACTTGTGCTTCAGCTTTACCTCCTCCTTCTGTGTGCTTGGAGCTATGGCATGCTTGTGCAGGTCCTATGATCTCTCTTCCTAAGAAGGGAAGTGTTATTGTTTACTTCCCACAGGGCCACTTTGAACAACAAGCTCAAGATTTTCCAATCACCGCTTATAACATCTCACCGCATGTGTTCTGTCGTGTGCTTGATGTTAAACTTCACGCAGAGGAAGGGAGTGATGAAGTGTATTGCCAGCTCTTGTTGGTTCCTGAAAGTGAGAAAGTAGAGCAAAACTTGCGGGCAGGGGAACTTGATGCTGATGGTGAAGAGGAGGATGCTGAAGCTGTAGTGAAGTCAACAACACCTCACATGTTCTGCAAGACTCTGACTGCTTCTGATACTAGCACTCATGGAGGATTTTCTGTCCCTCGTCGAGCAGCTGAAGATTGCTTCCCTCCCCTGGATTACAGTCAACAAAGACCTTCACAAGAGCTTGTGGCAAAGGATCTGCATGGCCTAGAATGGAAGTTTCGTCATATATACCGGGGTCAGCCACGGAGGCATTTGCTCACAACTGGATGGAGCGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGCGATGCTGTGTTATTTCTCAGAGGTGAGGATGGAGAGCTGAGATTAGGGATTCGTCGGGCAGCTCAGCTTAAGAGTTGTACCTTTGCAGTTCCCTCCAGTCAGCAATTGAATCCTAGCACTCTCATGGATGTTGTTAATGCTTTGTCTGCACGGTGTGCCTTTAGTGTTTGCTATAATCCAAGGGTCAGCTCTTCAGAATTTATCATACCACTCCACAAATTCTCAAAGAGCCTCGATTGTTCTTTTTCAGTTGGAATGAGGTTCAGGTTGCGATTTGAAACTGAAGATGCAGCGGAGCGAAGATTCACAGGATTAATAGCTGGAATTAGTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATAGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCCACTTCAAGTAACTTGATGGCAGGTGGTTTGAAGAGGAGCAGGATTGGATTGAGTTCATCAAAGCTAGAATTTCCAGTTCCCAATGGGATTGGAGCCTCAGACTTTGGGGAATCATCAAGATTCCGGAAGGTCTTGCAAGGTCAAGAAATGTTTGGTGTTAATACTCCCTATGATGGTATTAGTGCTCAGAGTCCCCGGTTATCCGAGTTAGGGAGGTGTTATCCTGGTTCAAACTGTTCTGGGATTGCTGCAACAGGAAATAATGCCAGAATCCCACAAGTAAGTTCTGATTTTTCCAGCAATGGCATAGGCTTCAGTGAATCTTTTAGATTGCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCCTATGGACGAGCCTTGTCTATGGAGGAGGCTCACGGAAATGGTCGCTTTGGAATCTTTGATGGTTATTATCAAATGCTTGGCTCCAGGAATGGATGGTCTCGTCAGATGCATGATAATTCTTCACATTTGCATGCTTCTGTTCCATCAGGGCAAGTGTCATCTCCATCATCGGTGTTAATGTTCCAGCAAGCAGTCAATCCAGTTTTGAACACCGATTATAATAACATACACAATCAGGAGGGCAAAATCCATTACCACGGTTCATATGCTTCTGAAATGAAAGGTCGAACTCCTGCAACTTTCACATCCGTTGAGCCGATTTACTCCGGGCACGCTCAGGAAGCCGCAAATTCTTTTGGTATGTTTAATATGCATAGTCCGTTGGCCGGTTCTCGTTCACATGAGTCAGTTTCAGCGCTTAGAGGCAGTCAAGAGATGGCTTCCTCATGTAAAAGTAGCTGTAGACTATTTGGCTTTTCATTAATTGAGGACAGAAACATTGCAAGTAAAGAAGCTGAGCCGACTACAATCACTTGTCAATTGAATTCTGGGCCTCCCTTTGCTAGACATGTTGATGATGAGTTCCACCCTGGCCATTCTCTCAGGAATAAGGCGGTGGTTGGAAGAAACTGCTCCAAAGGTGTGTTGCAGTATTGA 2172 0.453 MGLIDLNTTEDDETLSSSSSSSHSGISTCASALPPPSVCLELWHACAGPMISLPKKGSVIVYFPQGHFEQQAQDFPITAYNISPHVFCRVLDVKLHAEEGSDEVYCQLLLVPESEKVEQNLRAGELDADGEEEDAEAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSCTFAVPSSQQLNPSTLMDVVNALSARCAFSVCYNPRVSSSEFIIPLHKFSKSLDCSFSVGMRFRLRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDIEAARHNRVSPWEIEPSGSASTSSNLMAGGLKRSRIGLSSSKLEFPVPNGIGASDFGESSRFRKVLQGQEMFGVNTPYDGISAQSPRLSELGRCYPGSNCSGIAATGNNARIPQVSSDFSSNGIGFSESFRLQKVLQGQEILPSQPYGRALSMEEAHGNGRFGIFDGYYQMLGSRNGWSRQMHDNSSHLHASVPSGQVSSPSSVLMFQQAVNPVLNTDYNNIHNQEGKIHYHGSYASEMKGRTPATFTSVEPIYSGHAQEAANSFGMFNMHSPLAGSRSHESVSALRGSQEMASSCKSSCRLFGFSLIEDRNIASKEAEPTTITCQLNSGPPFARHVDDEFHPGHSLRNKAVVGRNCSKGVLQY 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0099 723 SMART B3_2 147 249 IPR003340 GO:0003677
Lal3g0099 723 CDD B3_DNA 145 247 IPR003340 GO:0003677
Lal3g0099 723 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Lal3g0099 723 SUPERFAMILY DNA-binding pseudobarrel domain 140 253 IPR015300 -
Lal3g0099 723 MobiDBLite consensus disorder prediction 1 26 - -
Lal3g0099 723 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Lal3g0099 723 PANTHER AUXIN RESPONSE FACTOR 28 723 - -
Lal3g0099 723 Pfam Auxin response factor 273 353 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal3g0099 723 Gene3D - 145 249 IPR015300 -
Lal3g0099 723 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 723 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal3g0099 723 Gene3D - 309 383 - -
Lal3g0099 723 MobiDBLite consensus disorder prediction 9 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0099 Lal-Chr3 610115 616263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0099 37 500 B3 DNA Binding Superfamily AT5G60450 49.896 3.62e-144 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal3g0099 B3 2.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0099 K14486 - gmx:100789906 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0099 3 610115 616263 Lal3g0099 3 610115 616263 ECH
Lal3g0099 3 610115 616263 Lal11g0214 11 1543995 1550264 LSH