Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0097 ATGGAGATCGAAGCAGATAACAATACTCAGAAGAGAGATGAAGAAGGTGATAATAGCAATGAGAATAACAATGAAAGCAATAGCAAAATCGTAAATTCGAATGAGGGTCAGAGCAGGCCCAAGCGTCAAATGAAAACCCCATTTCAGCTTGAAACGCTAGAGAAAGCTTATGCAATGGAGACTTACCCCTCGGAGGAGACGAGGGCAGTGCTGTCGGAGAAGTTGGGGCTGTCGGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGAGGTTGAAGGAAAAGAAGGACTCACAGCAAAAGAAGCCGGGGAAAATGGTGGTGGCGCCGACTTTGCTGGATTCCCCCATAGATGACATCAAATTGGGTCATGAACCTGGTTATGAATATGGATCAGTGTCTGGTTCTGGCTCCAGCCCTTTTACCAGTCTAGAGTTGAGGAATGTGGTGCCCCGTGGAGTGTCCGGGTACTATGAGTCACCCCAGACTATAATGGAGCTTAGAGCAATTGCCTGTGTGAAGGCACAATTAGGGGAGCCATTGAGGGAGGATGGACCTAGTCTCGGAATAGATTTTGATACGTTGCCACCAGATGCTTTTGGGGCACCAATAGCTGTTACAGAACAGCAGAAGCGGCCTAATCTTGCCTACGACAATAAAGTATACGAAAGACATGATGTTAGAACAAATAAGGCTATCGTAAGGACATTCCCTGAATATCCACTGTTTCTTCCAAACCAGCCTGGCATTAGGGTTGATGCTTTTGGTCAATTGGGCCCACCCCATTTACATGATCCAATGGAGGGTCCTACCAGAACACCTCCTTTTCCCCTTGGGAATGAGCAAATACCCAGAAATCAAGCTACCCAAAGTCATTATTCTCGTGTTTGCCAACCTGATAAGCATGGGGTTCCCTATTCATCTCCTCCTCTAGACAATGATGTTGCCTCCCGAAGAGAATTTTACACAAACATAGCCGATGCTGGAACAAGTTCCCACTTTTCTGATCACCCGGTTGTTGGACAAGATAATTCGCACTCTTTACCTGGTGGACAAGTTTCCCATAACGACACTGTGTTGCAAATGGAGAATAAGAAGAGTGATGATACCGGAGTTGCAAGGGAAGTTGACGTCTATGAGATTAGGATCAGGAAAGAGCTTGAGAAACAAGATAATCTGAGACGAAAGAACGAAGAGCGATTGAGGAAAGAATTGGAGAGACAGGATCGTGAAAGAAAGAAGGAAGAAGAGAGGTTGATGCGTGAGAGACAGCGAGATGAGGAAAGATTAAAGCGTGAGCAAAAACGGGAAATAGAACGAAGGGAAAAGTTTATGCTGAAAGAAAATTTAAAAGCGGAGAAGAGGAGACAAAAGGAAGAGCTTCGCAGAGAGAAAGAGGCAGAAAGAAGAAAGGTTGCCCTTGAAAAGGCAGCTGCTCGTAGAATAGCCAAAGAATCTATGGAGCTTATTGAGGATGAACAACTGGAACTGATGGAGTTGGCGGCTGCGAGCAAGGGACTATCCTCTATCATAAATCTTGATCTTGATACTTTGCAAGACCTTGGATCATTTAGGGATTCATTGTGTGTTTTCCCGCCTAAGAGTGTTAAGCTGAGAAAGCCATTTGCTATCCATCCCTGGATCAACTCAGAACAGAATGTTGGCAACCTTCTCATGGTTTGGAGATTCTTGATTACTTTTGCTGATGTTCTTGAGTTATGGCCTTTTACCCTTGACGAGTTCTTACAAGCATTTCATGACTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAGGTGATAATAAAAGATGTTGAAGATGTTGCTAGGACACCTTCTACAGGCTTAGGAGTGAACCAGAATGGAGCTGCTAATCCTGGAGGTGGCCATCCAGAGATTGTGGAAGGAGCATATTCATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGTTAGCATTGTCTGCCGGATTTGGACCTCAGTTGAAGAAAAGAAATATTTTGTGGTCTTATGCAAATGATAAAAACGAGAAAGAAAATATTTTGGGGTCTTTTGTTGCATTGTTTACTGGATCAAAGGTATCTGACTATCTGGAATGGCAGGGAAGAAGTGGTGAAGATATCATCTCTACACTTCGTAATGGTTCAGCCGCTGAAACTGCAGTGGCAAAAATGCACGAGAAAGGTCTGCTAGGTCCTCGAAGATCAAGGCACCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATTTCACGTTCTCTCGCTGGAGGGTAGCAAGGGTTTGACAGTATTAGATCTTGCTGAAAAAATTCAGAAATCCGGTCTCCGGGACCTGACGACCAGCAAGACACCTGAAGCATCAATTTCTGTGGCTTTAACAAGAGATACTAAACTTTTTGAAAGAATAGCTCCATCAACATATCGTGTACGATCTGCATTTAGAAAGGATCCTGCTGATGCTGAGTCTATTCTTTCGGAAGCAAGAAAGAAAACACAAATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGTTGATGATGCTGAAAGAGAAGATTCAGAAAGTGATGAAGTTGATGAGGATCCTGAGGTCGATGATTTAGTAAATTCTTCAAGTGTGATCCAAAATTCTGAACTGTATACCGACACAAACATTTGCTCATCAGATGTAAAAGAAAATTTGGCTCATGATGTTGGACTCATTAAAAATGAGTTTGGTAGAGATCTGCATTGTTTTCCTGAGAATGGCTCCAAGGATTCTGATTGTCCCACTTCTGTTTCCAAACAACCTCTTGCTTGTGCAGATTTGAGTACACAAAATCTTGGTCAAGATGATATAGAAATTGATGAAAGCAAGTCTGGAGAGTCTTGGGTTCAAGGTCTTACTGAAGGAGAATACTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGCATTGGTTGGTGTGGCCAATGAAGGGAATTCAATCCGTGTTGTTCTTGAGGATCGATTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCTGAAGCCCAGATAGATAAAATTCGTCTAAAAGATGATATTTTCAATAAATCAGATTTTCCATCAGTTATTGGGAATCAAGTTGAAATACAATATACATATCCTGCTATGGAGGGTAATCAAAGCCCATTGCTTGACATTAATATTAGCAATATTAAAAATGAAGCATCGCCCAGCACTGCACAAAACCAAAAGGCAACTCCAGTTGCACACAGGCTACCTGTGGAAAGGTCCTCGTCAGTTCAGGATTTATGCCCAGGGACAGGTCCAGACAACCCTCAGACTCAGGTACCTGCACCATATTCGAAACGGTCACGTTCACAATTGAAATCTTATATTGCCCACATGGCAGAGGAGATGTATATCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGTAATAGATATTGGCTGTTTGTTGCATCTGTTTCTAGTAATGATCCTGGTTCTGGCAGAATATTTGTTGAATGTCATGATGATGGCAAGTGGAGGCTTATTGATTCCGAAGAGGCCTTTGATGTTCTTTTGACATCACTGGATTCACGTGGGATCAGAGAATCACATTTGCGTTTAATGTTGAAAAAGATTGAGAGTTCTTTTAAAGAAAATGTTCGAAAGAATACACAATGTGCCAAAATTGAGTGTCCTAGCAGTACTCTTCATAGCTTCAAAATTGACCTTGGGAAAAATGAGAGCGAGAAGACAGCTGCCTTGAGGAGATATCAAGATTTTCAAAATTGGATGTGGAAAGAATGCTGTAAATCATCAATACTATGTGCAATGAAATCTGGGATAAAGAGATGCAAACCTCAGGTGGACATTTGTGATACATGTTTCAACCCTTATTTCGTTGAAGACTCCCATTGCAATTCCTGCCACCGGACTTTCCCCGCAGATAATGGATTTAATTATTCCGAACATGCATTTCAATGTGAAGACAAGTTATCCAAAGATATCTGTATTTCAGAATCTGCCCTTCCTTTGCGGACAAGATTGCTTAAGTTCCTGTTAGCTTGTATTGAGGTATCTGTTCTGCCTGAAGCATTTGGAACAATTTGGACAGATGATATTAGGAAGCGTTGGGGCATAAAGTTGAGCAAATCATCTTCTGTTGAGGAACTTTTACAGATATTGTCTCTATTTGAGAGAGCACTGCGACGGGATTTTCTATCGTCAAACTTCTCTACAACTGATGAATTGTTGGGATTGAGCAGTATGTCAGTAAGTACTGCACTTGCTTATACTGATCCAGAGTTTGCCGCTATACTTCCGTGGGTTCCACAAACTACTGCAGCATTGTCTCTCAGGCTTTTTGAGATTGATTCGTCCATCAGTTATGTAAAACCTGTGAAACCCGAGCCTCCTGAGGAGAAAGAAGCAAGAGAATACATGAGGCTCCCTTCGAGATGTACTCCCTTCAAATTCAAGGAGGAAGTTGAACCAACAGGATTAGACCATGATGAATTCATTAAGGATAAATCTGCTCCTAAGAAAGTTGTGCGAAGCAGCAACAAACGTGGACGAGGGTCTAAGGATCAAGGACGGGGTAAAAAGCTGTCTAAAAGACCATACAATTCCAAACGAGATATTGGCCGCCATAATGTTATGGTGACTGAGAATCTAACCCTCAAATTAAAACAACAGCAGGGACAAGGAACACAAGGACAGGCAGGTGGACGAGGGCGCCGAACGGTCAGGAAACGGAGGGTGGAAAAGAGAGCTGTTGAAGATTTGTTGCTTGGCAATATGGCAGCTGGTCATAGCAACAAGATCAGTAGAGTACCATTGAGAAGCATGGATGTAGGTTGGGATGTTAACATGGCAAGTCCTGTAACTCATGTCCACATGGATGTTGCTGATATCAGTAATAGTACTGAAGAGGTGGAATCTGATGATAATGCCCCAGCAGTAGAGTATGATAGAGGAAACTGGGAGATAGGTTTTAGTGGTGTTGCCCCCCACAACAGATGGAGTAATGATTTGGTTGCACTGAGTGATGAAGATGCGGATGCTTCTGAAGATGACAATGTCAATAGCCTTGAAGAGCATGAAGAGGAGGATTCAGAGGCAGATGCTATGAGTGAGAGTTCAGATGGCATTGCAAATAGAGTTGTAGAAAATGAAGACTCAGACTCGGCTGTCTCTGAAGATTCTTCAGATTAG 5232 0.4266 MEIEADNNTQKRDEEGDNSNENNNESNSKIVNSNEGQSRPKRQMKTPFQLETLEKAYAMETYPSEETRAVLSEKLGLSDRQLQMWFCHRRLKEKKDSQQKKPGKMVVAPTLLDSPIDDIKLGHEPGYEYGSVSGSGSSPFTSLELRNVVPRGVSGYYESPQTIMELRAIACVKAQLGEPLREDGPSLGIDFDTLPPDAFGAPIAVTEQQKRPNLAYDNKVYERHDVRTNKAIVRTFPEYPLFLPNQPGIRVDAFGQLGPPHLHDPMEGPTRTPPFPLGNEQIPRNQATQSHYSRVCQPDKHGVPYSSPPLDNDVASRREFYTNIADAGTSSHFSDHPVVGQDNSHSLPGGQVSHNDTVLQMENKKSDDTGVAREVDVYEIRIRKELEKQDNLRRKNEERLRKELERQDRERKKEEERLMRERQRDEERLKREQKREIERREKFMLKENLKAEKRRQKEELRREKEAERRKVALEKAAARRIAKESMELIEDEQLELMELAAASKGLSSIINLDLDTLQDLGSFRDSLCVFPPKSVKLRKPFAIHPWINSEQNVGNLLMVWRFLITFADVLELWPFTLDEFLQAFHDYDSRLLGEIHVALLKVIIKDVEDVARTPSTGLGVNQNGAANPGGGHPEIVEGAYSWGFDIRNWQKNLNQLTWPEIFRQLALSAGFGPQLKKRNILWSYANDKNEKENILGSFVALFTGSKVSDYLEWQGRSGEDIISTLRNGSAAETAVAKMHEKGLLGPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLDLAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYRVRSAFRKDPADAESILSEARKKTQIFENGFLAGEDVDDAEREDSESDEVDEDPEVDDLVNSSSVIQNSELYTDTNICSSDVKENLAHDVGLIKNEFGRDLHCFPENGSKDSDCPTSVSKQPLACADLSTQNLGQDDIEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKIRLKDDIFNKSDFPSVIGNQVEIQYTYPAMEGNQSPLLDINISNIKNEASPSTAQNQKATPVAHRLPVERSSSVQDLCPGTGPDNPQTQVPAPYSKRSRSQLKSYIAHMAEEMYIYRSLPLGQDRRRNRYWLFVASVSSNDPGSGRIFVECHDDGKWRLIDSEEAFDVLLTSLDSRGIRESHLRLMLKKIESSFKENVRKNTQCAKIECPSSTLHSFKIDLGKNESEKTAALRRYQDFQNWMWKECCKSSILCAMKSGIKRCKPQVDICDTCFNPYFVEDSHCNSCHRTFPADNGFNYSEHAFQCEDKLSKDICISESALPLRTRLLKFLLACIEVSVLPEAFGTIWTDDIRKRWGIKLSKSSSVEELLQILSLFERALRRDFLSSNFSTTDELLGLSSMSVSTALAYTDPEFAAILPWVPQTTAALSLRLFEIDSSISYVKPVKPEPPEEKEAREYMRLPSRCTPFKFKEEVEPTGLDHDEFIKDKSAPKKVVRSSNKRGRGSKDQGRGKKLSKRPYNSKRDIGRHNVMVTENLTLKLKQQQGQGTQGQAGGRGRRTVRKRRVEKRAVEDLLLGNMAAGHSNKISRVPLRSMDVGWDVNMASPVTHVHMDVADISNSTEEVESDDNAPAVEYDRGNWEIGFSGVAPHNRWSNDLVALSDEDADASEDDNVNSLEEHEEEDSEADAMSESSDGIANRVVENEDSDSAVSEDSSD 1743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0097 1743 MobiDBLite consensus disorder prediction 21 45 - -
Lal3g0097 1743 Pfam DDT domain 552 606 IPR018501 -
Lal3g0097 1743 PANTHER HOMEOBOX DOMAIN PROTEIN 1239 1743 - -
Lal3g0097 1743 PANTHER HOMEOBOX DOMAIN PROTEIN 7 1237 - -
Lal3g0097 1743 MobiDBLite consensus disorder prediction 853 875 - -
Lal3g0097 1743 SUPERFAMILY Homeodomain-like 27 96 IPR009057 -
Lal3g0097 1743 Coils Coil 375 440 - -
Lal3g0097 1743 MobiDBLite consensus disorder prediction 1103 1125 - -
Lal3g0097 1743 ProSiteProfiles DDT domain profile. 550 609 IPR018501 -
Lal3g0097 1743 Pfam HB1, ASXL, restriction endonuclease HTH domain 756 824 IPR007759 GO:0006355
Lal3g0097 1743 Gene3D - 22 99 - -
Lal3g0097 1743 SMART testlast3 550 609 IPR018501 -
Lal3g0097 1743 ProSiteProfiles HARE-type HTH domain profile. 756 825 IPR007759 GO:0006355
Lal3g0097 1743 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 7 1237 IPR044977 GO:0006357
Lal3g0097 1743 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1239 1743 IPR044977 GO:0006357
Lal3g0097 1743 MobiDBLite consensus disorder prediction 857 875 - -
Lal3g0097 1743 MobiDBLite consensus disorder prediction 1689 1716 - -
Lal3g0097 1743 MobiDBLite consensus disorder prediction 1099 1125 - -
Lal3g0097 1743 MobiDBLite consensus disorder prediction 1569 1590 - -
Lal3g0097 1743 MobiDBLite consensus disorder prediction 1688 1743 - -
Lal3g0097 1743 MobiDBLite consensus disorder prediction 1509 1555 - -
Lal3g0097 1743 MobiDBLite consensus disorder prediction 404 431 - -
Lal3g0097 1743 CDD homeodomain 39 95 IPR001356 GO:0003677
Lal3g0097 1743 MobiDBLite consensus disorder prediction 1 19 - -
Lal3g0097 1743 SMART HOX_1 38 100 IPR001356 GO:0003677
Lal3g0097 1743 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 965 1008 IPR028942 -
Lal3g0097 1743 Coils Coil 443 477 - -
Lal3g0097 1743 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Lal3g0097 1743 Pfam Homeodomain 39 95 IPR001356 GO:0003677
Lal3g0097 1743 MobiDBLite consensus disorder prediction 1 49 - -
Lal3g0097 1743 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1146 1219 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0097 Lal-Chr3 586951 597782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0097 1 1591 Homeobox Transcription Factor Family AT1G28420 48.395 0.0 1263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal3g0097 WSD 4.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0097 - - gmx:100777465 2286.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0097 3 586951 597782 Lal3g0097 3 586951 597782 ECH
Lal5g1716 5 19283763 19294601 Lal3g0097 3 586951 597782 LSH
Lal3g0097 3 586951 597782 Lal11g0207 11 1479822 1489647 LSH
Lal15g0643 15 4406389 4417132 Lal3g0097 3 586951 597782 PCT
Lal3g0097 3 586951 597782 Lal15g0643 15 4406389 4417132 PCT