Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0096 ATGGGAGTGGAGTATTATGAGATATTGGAGGTTGAAAGAAGTGGCAGTGATGAAGATTTGAAGAAAGCATATAGAAAGCTTGCAATGAAATGGCACCCTGATAAAAATCCAAACAATAAAAGAGAAGCTGAATCTAAATTCAAACAGATTTCTGAAGCCTATGAGGTTCTAAGTGATCCACAGAAGAGAGCAGTTTATGATCAGTATGGAGAAAAAGCCCTTAATGGCCAAATGCCACATCCGAACACTGCCGGTGCTTCATTCTTCCATACTGGGAATGGTCCAACAACATTTAGGTTCAACCCCAGAAATGCTGACCATGTATTTGCAGAATTTTTTGGGTCTTCAAGCCCATTTGGAGGAACGGGAGTTGGTCGTGGCAGTTGTGGTGGCTACGGCAGGGGCATGAGATTTGGGAATAGTTGGGTGTCAAGGTCCTTTGGTGGAATGTTTAGAGATGACATGTTTAGTTCATCCGGAGAAGGCAGGCCTATGAATCAAGGTGCACCACGCAAGGCACCTCCTATCGAAAATACATTGCCTTGCAGCCTTGAGGAACTTTACAAGGGGACTACCAAAAAGTTGAAGATCACAAGGGAAGTTCTAGATGCAAGGGGGAAAACTGTGCATGTGGAGGAAATCTTAACCATTGAAATCAAACCTGGCTGGAAAAAGGGAACAAAATTAACTTTTGCAGAGAAAGGAAATGAGCAGCCAAATGTTATTGCGGCAGATCTTGTGTTTATAATTGATGAGAAACCTCATGGTGTTTTTAAAAGAGATGGTAATGATTTAGTGGTGACACAAAAGATATTACTCGCAGAAGCTGAAGCTCTTACAGGCTACACTGTCCGTCTTACAACTCTAGATGACAAGGATCTGACCATTACCATAAACAATGTGATTCATCCAAACTATGAAGAGGTGGTCCTCGGGGAAGGTATGCCCATTCCTAAAAATCCTTCACAGAGGGGTAACCTTAGGATCAAATTCAACATTGAAGTTCCAAACAATGTTGACCCTGGTGCAGAGAGCCAGAACTAA 1044 0.4234 MGVEYYEILEVERSGSDEDLKKAYRKLAMKWHPDKNPNNKREAESKFKQISEAYEVLSDPQKRAVYDQYGEKALNGQMPHPNTAGASFFHTGNGPTTFRFNPRNADHVFAEFFGSSSPFGGTGVGRGSCGGYGRGMRFGNSWVSRSFGGMFRDDMFSSSGEGRPMNQGAPRKAPPIENTLPCSLEELYKGTTKKLKITREVLDARGKTVHVEEILTIEIKPGWKKGTKLTFAEKGNEQPNVIAADLVFIIDEKPHGVFKRDGNDLVVTQKILLAEAEALTGYTVRLTTLDDKDLTITINNVIHPNYEEVVLGEGMPIPKNPSQRGNLRIKFNIEVPNNVDPGAESQN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0096 347 SMART dnaj_3 3 62 IPR001623 -
Lal3g0096 347 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lal3g0096 347 Gene3D - 255 337 - -
Lal3g0096 347 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 338 - -
Lal3g0096 347 SUPERFAMILY Chaperone J-domain 4 100 IPR036869 -
Lal3g0096 347 CDD DnaJ 4 59 IPR001623 -
Lal3g0096 347 Gene3D DnaJ domain 3 123 IPR036869 -
Lal3g0096 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 257 340 IPR008971 GO:0006457|GO:0051082
Lal3g0096 347 CDD DnaJ_C 174 338 - -
Lal3g0096 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 170 266 IPR008971 GO:0006457|GO:0051082
Lal3g0096 347 Gene3D - 173 254 - -
Lal3g0096 347 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lal3g0096 347 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lal3g0096 347 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lal3g0096 347 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lal3g0096 347 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lal3g0096 347 Pfam DnaJ C terminal domain 176 336 IPR002939 -
Lal3g0096 347 Pfam DnaJ domain 4 67 IPR001623 -
Lal3g0096 347 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0096 Lal-Chr3 583786 586726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0096 5 74 C2H2 Transcription Factor Family AT1G74250 37.838 6.56e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0096 K09510 - tcc:18596788 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0096 3 583786 586726 Lal3g0096 3 583786 586726 ECH