Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0093 ATGGCAAATAGTGATCGCTTGGAATGGGACGCTGATAAACTACTTCGGCTCTATTTGCATGACTACATGTTGAAAAGGGGAATGCACAGTACTGCACAGACTTTCAAGGAAGAAGCTGAATTTGATAACAAAGATTCTAATGTGATTGATTCTCCTGATGGGTTCCTGCATGAATGGTGGTGTCTTTTCTATGATGTATATAAGTTTAGGACAGTGAAGGATGAGGAGACTTCACTGCCAGAATCCTCTATTAAGATGACAGATAATGCAAGTAATAGTAATTCTTTTCCTATGATCTCTCAAATACCAATGAGTCAGCTGAGACCTCTATCTCATCAATTTCAAGACAGCTCCACTTTTAATCACATGCTGCCACAACCACTTGCTGGTCTAATACCTTCAACACTGTACAATAAAGAACCTCTCGGGTACTTGGTCGGAAATGATGAACCAAGTTTGCAGGATCTTTCCAAAGCAAGTAACCTGAAGTTCTTTGCTGGGAGTAGTTCAAGTCAATCCCTGCTAGATGTAGGGAAGCAGGCCCAGAATCAAATGTTAAAGGATAGTGGAATTGGCATTTGTTTGGGGAAGAATGTACCTAGAAACCCTCTGCAATTAGTACAACCAAAAAGCAATGTAGCTCTCAATCTAGCGCCACTAGATGGATGGCTAAGAAATGTGGGTGGTGGCGGAAACCAGGTATTAACTTCACTTGTGCACGCACCAAATTATAGGCATCAGTGTCAAGTATTGAAAACACAAAATCAGGTAGCAGTTCCTGCTCAAATACTTGAGTCTACTCCTGCAAGTCATGCTTTTACTGTTCCTGGATGCTCTACCAAATATAGCAGTCAATATCTGAAGATGACTCCAACTCCAAAGACTGAATCAAGTAATAACGATATGCAGATGATGGGCCCGGTGATTAAAACCGCGGAGAATCAAAACCAGCAGGATCAGCAACTACAGTCCCAAAATGTAGAGATGAGCGGAAAGAGAAAGAAAACAGTATCCTTACGACACGGACAAAATGGCCAGGACTGTACGGGTGCAGCAGATGGAACACCTGTCGATGAAAATGTGGAGTCTTTCCTTTCTTTGGAAAATGAACATGCTGATCATATAATTGTGCCTTTCAGCAATCTGAAGCGTATTTCAACTTCATACAGCAGAAATGAAAATAAAGGTTTTACATTTGAAGAGGTTGGTTGCCTTCATTCAAGTAAAGGCAAGATTTTGTCCACCCATTTTTCTTCGGATGGAAAGATTTTGGCAAGTGCTGGACATGAGAAAAAGGTTTTCATTTGGAACACGGAAACTTTTGATTGTGTTACTACCCCAGAAGCGCATTCACTTCTCATCACAGATGTTCGATTCAGAACAGGCTCAACTATATTTGCAACATCCTCCTTTGATAGATCTGTAAGACTATGGGATGCTGCAAAACCAACCAGACCATTGCTCAAACTTGAAGGGCATGCCGAACAAGTAATGTCATTGGATTTCCACCCAAGAAAGGTGGACCTTCTATGCTCGTGCGATATCAATGATGCAATTCGTCTATGGAATGTCAGTCAAGGTGCATGCATGCATATCACTAAGGGAGGTAGTAAACAAGTCAGATTTCAGCCTGATTTTGGAAAGCTTCTTGCTACTGCTACAGGAAATGATATGAAGATAGTTGATGTTGAGGCTGATGCCGTTCTGTGCAATCTAAAGGGACATGTTAAAGACATTCTTTCCATTTGTTGGGATAGAAGTGGAAACTACATTGCCTCGGTTAGTGAAGATAGTGCGCGTATCTGGTCATCCGATGGAAAATGCATCCATGAATTACATTCAACTGGAAACAAGTTCCAATCTTGCATATTTCATCCAGCATATCTTAACCTCTTAGTTATTGGTGGCTATCAGTCTCTGGAATTATGGAGTCCAAGCGATGGCAACAAAACATGGAGTGTTGCAGCACACAAGGGATTAATTGCTGGATTATCAGAATCACCCCATGATGAATTGATTGCCTCAGCTAGCCATGATTGTTGCGTGAAACTATGGAAATAA 2061 0.4124 MANSDRLEWDADKLLRLYLHDYMLKRGMHSTAQTFKEEAEFDNKDSNVIDSPDGFLHEWWCLFYDVYKFRTVKDEETSLPESSIKMTDNASNSNSFPMISQIPMSQLRPLSHQFQDSSTFNHMLPQPLAGLIPSTLYNKEPLGYLVGNDEPSLQDLSKASNLKFFAGSSSSQSLLDVGKQAQNQMLKDSGIGICLGKNVPRNPLQLVQPKSNVALNLAPLDGWLRNVGGGGNQVLTSLVHAPNYRHQCQVLKTQNQVAVPAQILESTPASHAFTVPGCSTKYSSQYLKMTPTPKTESSNNDMQMMGPVIKTAENQNQQDQQLQSQNVEMSGKRKKTVSLRHGQNGQDCTGAADGTPVDENVESFLSLENEHADHIIVPFSNLKRISTSYSRNENKGFTFEEVGCLHSSKGKILSTHFSSDGKILASAGHEKKVFIWNTETFDCVTTPEAHSLLITDVRFRTGSTIFATSSFDRSVRLWDAAKPTRPLLKLEGHAEQVMSLDFHPRKVDLLCSCDINDAIRLWNVSQGACMHITKGGSKQVRFQPDFGKLLATATGNDMKIVDVEADAVLCNLKGHVKDILSICWDRSGNYIASVSEDSARIWSSDGKCIHELHSTGNKFQSCIFHPAYLNLLVIGGYQSLELWSPSDGNKTWSVAAHKGLIAGLSESPHDELIASASHDCCVKLWK 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0093 686 MobiDBLite consensus disorder prediction 315 332 - -
Lal3g0093 686 ProSiteProfiles LIS1 homology (LisH) motif profile. 11 43 IPR006594 GO:0005515
Lal3g0093 686 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 446 IPR001680 GO:0005515
Lal3g0093 686 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 654 686 - -
Lal3g0093 686 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 447 479 - -
Lal3g0093 686 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 479 IPR001680 GO:0005515
Lal3g0093 686 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 532 IPR001680 GO:0005515
Lal3g0093 686 Pfam WD domain, G-beta repeat 442 479 IPR001680 GO:0005515
Lal3g0093 686 Pfam WD domain, G-beta repeat 570 603 IPR001680 GO:0005515
Lal3g0093 686 Pfam WD domain, G-beta repeat 406 437 IPR001680 GO:0005515
Lal3g0093 686 Pfam WD domain, G-beta repeat 649 686 IPR001680 GO:0005515
Lal3g0093 686 SUPERFAMILY WD40 repeat-like 399 686 IPR036322 GO:0005515
Lal3g0093 686 ProSitePatterns Trp-Asp (WD) repeats signature. 510 524 IPR019775 -
Lal3g0093 686 Gene3D - 539 686 IPR015943 GO:0005515
Lal3g0093 686 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 686 IPR001680 GO:0005515
Lal3g0093 686 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 686 IPR044716 GO:0003714
Lal3g0093 686 Gene3D - 374 538 IPR015943 GO:0005515
Lal3g0093 686 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 490 527 - -
Lal3g0093 686 SMART WD40_4 647 686 IPR001680 GO:0005515
Lal3g0093 686 SMART WD40_4 398 437 IPR001680 GO:0005515
Lal3g0093 686 SMART WD40_4 605 644 IPR001680 GO:0005515
Lal3g0093 686 SMART WD40_4 526 562 IPR001680 GO:0005515
Lal3g0093 686 SMART WD40_4 440 479 IPR001680 GO:0005515
Lal3g0093 686 SMART WD40_4 483 523 IPR001680 GO:0005515
Lal3g0093 686 SMART WD40_4 565 603 IPR001680 GO:0005515
Lal3g0093 686 CDD WD40 401 686 - -
Lal3g0093 686 MobiDBLite consensus disorder prediction 315 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0093 Lal-Chr3 557414 563653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0093 422 685 Miscellaneous Gene Families AT5G08390 23.381 2.57e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal3g0093 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0093 - - lang:109345600 1042.72