Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0088 ATGAGTGCAGATACTAATTCTTGGATAAGGAGGACAAAATTCTCTCATACTGTGTGCCATAGATTGGATCCTTCTAGATTGACCTCTCTTCCTATTAGCATTCAACCAGGTCTGAAATCAAGGCCTTCACATGTTCAAAGGTATCCCGTATTAAACACACAGAGATCTAAATCCCCTTTGCCTGAAACTGTTGTTTCTGAGACATTCAAGGAAGCTCGGCATGAACAGAAGAGGTTCTCGACGCCAGGTCCTCGAATGAATGATAATGATATGAGAATAATGGGTAAGTTATCAGATAAGGATTCACAAGAAAGCAGGATATTAAGTGCAAAGTCAACTTCCACTAGTCCAATTAGGCATGTGAAATTGAATGGCAAGTCATTGAAGCATCGCAAAGATGGATGGACTAAGTATTTTGACAATGGTGGAGGAAGGGTTACTGCTGAGGAAACAACCGATGAATGGACTGCTGACCTCTCTAAGCTGTTTCTTGGCCTTAGGTTTGCTCATGGAGCTCATAGTCGGCTTTACCATGGTGTATATAAGGAAGAACCGGTTGCTGTGAAAATTATTAGGGTACCTGATGATGACGAAAATGGAACCTTGGCTGCTAGATTAGAGAACCAGTTCATTAGAGAAGTCACCCTTTTATCTCGACTCCACCATCCAAATGTTATAAAGTTTGTAGCAGCATGCAGAAAGCCACCAGTCTATTTTATCATCACAGAGTATCTAGAAGAAGGTTCCTTGAGGGCATATTTGCATAAATTGGAGCACAAAACTGTTTCTACTCAAAAGCTAATATCTTTTGCTCTGGATATTGCTCGAGGAATGGAATATATACACTCTCAAGGTGTCATTCACCGGGACCTTAAACCAGAGAATGTCCTCGTCGATGAAGACTTTCATCTTAAAATTGCTGATTTCGGCATTGCTTGTGAGGAGGCAGTCTGTGACTTAATGGCTGATGATCCTGGTACCTACCGTTGGATGGCACCTGAGATGATCAAGCGTAAATCCTATGGGAAAAAGGTTGATGTCTACAGTTTTGGACTTATGTTATGTGAGATGGTGACTGGAACAATACCATATGAGGATATGACTCCAATCCAGGCTGCTTTTGCAGTAGTAAACAAGAATTCAAGGCCTTTTATTCCTACAAACTGTCCACCTGTCATGAGAGCTTTAATTGAACAATGTTGGTCGTCGCAACCGGATAAACGACCGGAGTTCTGGCAAATTGTTAAGGTTTTAGAGCAATTTGAATCTTCATTTGCCCGCGACGGAACCCTGACTCTGCAGCAAAACCCTTGTTCCCATGATCATAAGAAAAGACTTCGTAACTGGATTCAAAAACTTGGCCATGTGCATCAAAACAATGGTCCTATTCTCAAGCCTAAATTCATATGA 1410 0.4142 MSADTNSWIRRTKFSHTVCHRLDPSRLTSLPISIQPGLKSRPSHVQRYPVLNTQRSKSPLPETVVSETFKEARHEQKRFSTPGPRMNDNDMRIMGKLSDKDSQESRILSAKSTSTSPIRHVKLNGKSLKHRKDGWTKYFDNGGGRVTAEETTDEWTADLSKLFLGLRFAHGAHSRLYHGVYKEEPVAVKIIRVPDDDENGTLAARLENQFIREVTLLSRLHHPNVIKFVAACRKPPVYFIITEYLEEGSLRAYLHKLEHKTVSTQKLISFALDIARGMEYIHSQGVIHRDLKPENVLVDEDFHLKIADFGIACEEAVCDLMADDPGTYRWMAPEMIKRKSYGKKVDVYSFGLMLCEMVTGTIPYEDMTPIQAAFAVVNKNSRPFIPTNCPPVMRALIEQCWSSQPDKRPEFWQIVKVLEQFESSFARDGTLTLQQNPCSHDHKKRLRNWIQKLGHVHQNNGPILKPKFI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0088 469 Gene3D Phosphorylase Kinase; domain 1 150 246 - -
Lal3g0088 469 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 446 - -
Lal3g0088 469 MobiDBLite consensus disorder prediction 68 90 - -
Lal3g0088 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Lal3g0088 469 CDD STKc_MAP3K-like 169 418 - -
Lal3g0088 469 ProSiteProfiles Protein kinase domain profile. 162 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0088 469 SUPERFAMILY Protein kinase-like (PK-like) 149 418 IPR011009 -
Lal3g0088 469 SMART serkin_6 162 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0088 469 Pfam Protein tyrosine and serine/threonine kinase 168 418 IPR001245 GO:0004672|GO:0006468
Lal3g0088 469 Gene3D Transferase(Phosphotransferase) domain 1 247 461 - -
Lal3g0088 469 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 446 - -
Lal3g0088 469 PRINTS Tyrosine kinase catalytic domain signature 242 255 IPR001245 GO:0004672|GO:0006468
Lal3g0088 469 PRINTS Tyrosine kinase catalytic domain signature 280 298 IPR001245 GO:0004672|GO:0006468
Lal3g0088 469 PRINTS Tyrosine kinase catalytic domain signature 326 336 IPR001245 GO:0004672|GO:0006468
Lal3g0088 469 PRINTS Tyrosine kinase catalytic domain signature 345 367 IPR001245 GO:0004672|GO:0006468
Lal3g0088 469 PRINTS Tyrosine kinase catalytic domain signature 389 411 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0088 Lal-Chr3 523752 527485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0088 1 457 MAP Kinase Kinase Kinase AT5G58950 56.859 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal3g0088 PK_Tyr_Ser-Thr 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0088 - - gmx:100500590 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0088 3 523752 527485 Lal11g0186 11 1301889 1305106 LSH
Lal16g0677 16 4384979 4388394 Lal3g0088 3 523752 527485 PCT
Lal23g0945 23 11536579 11541238 Lal3g0088 3 523752 527485 PCT
Lal3g0088 3 523752 527485 Lal16g0677 16 4384979 4388394 PCT
Lal3g0088 3 523752 527485 Lal23g0945 23 11536579 11541238 PCT