Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0087 ATGGCATTTGAGCACTACTTTTCTGATGAACATAAAAGCAAAAGCATTCCCAATGCTGTGACAGAAACAGAAAATTACAATGGTTGTTTTGATTGCAACATCTGCTTAGACTTTGCATATGAACCAGTAGTCACTCTTTGTGGCCACCTTTACTGCTGGCCTTGCATCTACAAGTGGATTCATGTCCAAAGTGATTCACTTGCAACTGATGAGCACCCACAGTGCCCTGTTTGCAAGGCTGATATATCCCATACTACAATGGTTCCACTCTATGGCCGCGGCCAGGTCTCAACTCAAAGTCACCATGATGGAAAATCATCCTCTTGTTGCGATATTTTCGTACCACCTAGACCTTCTGCTTCCAGTGCTGAAGCTCTTTTGGGAACATCATCTCAAACTGGTCAACAACTTCCATACCGAAATCCTTATCAGCGTCACTATGAAGAGGATTCCTCCCCTCAATTGCTCAATCCAGGATATCAAAACCCTGTGGTTGGCATGCTTGGAGAAATGGTTTATGCTCGAGTGTTTGGCAGTTCAGAAAATTCATATGCCAACCCGAATTCTTATCAGCTGATGGGAAGTAATGACCCAAGATTGAGACAGCAAGAGATGCTGATAGACAAATCACTTAACAGAATTTTGATTTTTCTTTTTTGCTGCTTTGTTCTGTGTCTTATTGTCTTCTGA 690 0.4217 MAFEHYFSDEHKSKSIPNAVTETENYNGCFDCNICLDFAYEPVVTLCGHLYCWPCIYKWIHVQSDSLATDEHPQCPVCKADISHTTMVPLYGRGQVSTQSHHDGKSSSCCDIFVPPRPSASSAEALLGTSSQTGQQLPYRNPYQRHYEEDSSPQLLNPGYQNPVVGMLGEMVYARVFGSSENSYANPNSYQLMGSNDPRLRQQEMLIDKSLNRILIFLFCCFVLCLIVF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0087 229 Pfam Zinc finger, C3HC4 type (RING finger) 32 78 IPR018957 GO:0046872
Lal3g0087 229 SUPERFAMILY RING/U-box 27 91 - -
Lal3g0087 229 SMART ring_2 32 78 IPR001841 -
Lal3g0087 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 92 IPR013083 -
Lal3g0087 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 229 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal3g0087 229 CDD RING-HC_AtRMA_like 30 80 - -
Lal3g0087 229 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Lal3g0087 229 ProSiteProfiles Zinc finger RING-type profile. 32 79 IPR001841 -
Lal3g0087 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0087 Lal-Chr3 517215 517904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0087 13 214 C3H Transcription Factor Family AT4G27470 41.096 5.63e-48 156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1741 5 19488348 19490192 Lal3g0087 3 517215 517904 LSH