Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0077 ATGGCCGAGGTAGAGGGTTTCGACTTTATGCTGGATGATGTTAACGTCACCGATGATGACGATGATAAACTCGTTATGGATATTGAATCCTTTCTCAGTGTTCTTAATGAGGATTGCGACCCTCTCGAGGGTAGTCCCGATGGTTCTTCATTGAAAAATGTTTCACCCAGTGAATCTGACATCCATGACAATTTTCAGCTTCAAAAGAGGAATTCTATGCTTGACTGTGAACATGAAAACCAGGGACCTTCATCACAGACCTGCTCTTCCATGAATGCATTTGCTGGTGGTTGTAGGGACTCGTCTTCTCTGGTTGAAAATGATGAGATATGCTACACAGAAATAAATGGTGTTTCTAAATGTGAGATACCTGCTTATAGTGTGGGTACAAGTTTCCCTGTGGCAAATTCAAACAACATAGCCATTTATGGAGATAATTTGAACATGAGTTTGTGGAAAAGTGAAAATGAGAGCCAAATCAAGCATGTCAAAGATGAGGTTGAATCTGAATATGCTTTATGCAGCTCTTTCATTGATAATGTTGATTTAAATTTCCAAGATTATGAAACTTACTTGAAAGAAATTATTGGGGAAGTTTCTGGGCAACAGGAAAATGACTCATGTGCATCTTTTGAAACACCGTTTGTGGATGCTGATAGATCATCACATATTGCAACTTCAACTGATTCTACTATTTGTCAAGGCTCCAATGTTTCCAGTGATTATAAGGACCAGTTTCCGTCCTTGAATTGTTATCATGGTATGGATTATAGGCCTGTTGGTGACAACACTTTGGGTTGTTTGCCTAATGGTGTTTCTCCTCAATTTTGGACTAAAGGAGAAATGATGAAAAACATGAAGGTTGAAAATGTGGGGTCTTTTGCCAATAAGTCACATGTGAGTGGCATGCAGTCAAGCACTTCTGGGGAGATGTCGTTTCAGGATTGTCAATTTAGGTTAGCAGATAGTGAAGGTCCTTTATATTTTCCTAGTGGTGTTTCCTTTGAAGACAGGGCATCAGTGCAACTTTCAGCTTCTGCTTCATACATGTCAAGTGAAGGCCAATCCCTTTGTTTCAAAGATGGAAGAAATGAATTGGTTATGCCGTACCCATATTCTTCTCAGAGTGATTATGACGAGTTCAATGTAGGTCAAGAGGTGAAACAATTACCTGGTATCATTTATGATTTTCGCAAGTGTGTGGATAGTGACACAGTTATAAAAACCGAGAGGGCTGATTATCATCAAGATACTATCAATAGAACTGCTAATAAATATCCAGGAAACATGGGAAATCTGAATTTCAAATCCTTGGACAAATTTTTGTCTAATGGGCAGGCTTCAATTGCCTTTCAGAAGCAGTTTAATTATTATATGGGTGAAGGAGAGGAAAAAATCATTCGGTATAAAAGTGATGATTCCCAACTTTCAAAAGGAAGTAGCGAGAGATCCCATATTGAGGATGACTCTGATATTTGCATTATTGAAGACACCAGTCGTCCTGAACCTACAAGTCGGTCTGCAGAACATGGGAATTCCCTTAATATGGCACAGCCTTCTAGATGTGGTTATACCCAATCTTGTATGGGGGGAGGCACAAGGCCAAAGGCACGCGATGAGCAATACATATTAAGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAATTAGTCTACCAGATGGACTGCTGGCAGTTTCTCTCTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAATGTATACTGTTCAGGAGGAATTCTTGCTGATGATCAGGGTCTTGGAAAAACAGTATCAACTATTGCTTTAATATTGAAGGAAAGGCCTCCAGTGCTTAATACTTGCAATGATGCACAAAAAAGTGAATTGCAAACTTTGAATTTGGATGCAGATGATGACTTGCTTTCTGAGAATGGTGGAGTGAAGAAAGAATTTGATACATGTCAGGATATGTCAAGTAGATATCCAATCAAAACCATGAATTTGTTGGTGCCAAGGAAAGGAAGGCCGTCTGGAGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGGCAATGGGCTGAGGAGTTGGATAATAAGGTAACCTGCAAAGCAAAACTTTCTGTGCTGGTTTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATATTGTTCTGACAACTTATTCAATTGTCAGCTTGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAAGAAGGAATTTATGAAGATCATACTGTGCCAAGCAGGAAAAGGAAATACCCTCCTAATTCTAGCAAACGTGGCAAGAAAGTTTTGGACAGCACGATGCTTGAGGCTGTTGCTCGCCCTCTTGCTAAGGTGGCTTGGTTTAGAGTTGTCTTAGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCGTGTTGGGGTCTTCGAGCTAAGCGTAGATGGTGCTTATCAGGAACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGAACCTTATGCTGTGTACACATCATTCTGTTCTACAATTAAGATACCAATCAGCAGAAGTCCATCAAAAGGGTATAGGAAGCTACAAGCTGTCTTAAAGACCATAATGTTACGTCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATTTCCCTGCCACCGAAGTCTGTAGAGTTGAAAAAAGTAGATTTTTCACAGGAAGAACGCAATTTCTATTCTAGACTAGAGGCTGATTCACGTGCACAATTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTCAACATTTTGTTGATGCTTCTGCGCCTTAGGCAAGCTTGCGATCATCCTTTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGACGGCAAAGAAACTTCCTCAGGAAGAACAATTATCTCTTCTAAATTGTTTAGAGGCTTCTTTGGCCCTTTGTGGTATCTGTAATGACCCTCCTGAAGATGCTGTTGTTTCCATCTGTGGTCACGTTTTCTGTAACCAGTGCATTTGTGAACATCTTACTGGTGTTGACAATCAGTGCCCTGCTTCAAAGTGCAAAACTCGACTAAGCATGTCTTCAGTGTTTTCGAAAGTCACATTAAACAGTTACATTTCTAACCAGCCTTCGAATAACTTGCCTGGTAGCTCTGGTTCTGAAGTGGGGGAATTTGAGCCTTGTTCTCATACTCACCCATGCGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAACCACAATGCCGTGCTTCCAAGAAAAATTATGCACAGCACATTTCTGGTCAAAGTATCGACTGTCTTAGAAATTCCTATGGTGCTGATAGTGGTAAATCTTTCAATGATTCTCCTGAGAGTCAAAATCTGCCTGGGGAGAGAAGCTCTGATGATTCAGTTGGTGTTGCAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTGGATTTGCTTGAAGCTTGTCTTAAGAATTCTTCAATTCAGTACCGAAGACTTGATGGAACAATGTCAGTCATCGCAAGAGATAAAGCTGTTAAAGACTTTAACACTCTCCCCGAGGTATCGGTTATGATTATGTCTTTGAAGGCTGCCAGTCTAGGCCTAAACATGGTTGCAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGACCTGTTACAGTTTTGCGGTTAACTGTGAAGGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCATAAGAAGCGAAAAATGGTTGCGTCTGCATTTGGTGAGGATGGAACAGGAGGCCAACAAAGTCGCCTTACAGTGGATGATTTGAAATACTTGTTCATGATGTGA 3972 0.4076 MAEVEGFDFMLDDVNVTDDDDDKLVMDIESFLSVLNEDCDPLEGSPDGSSLKNVSPSESDIHDNFQLQKRNSMLDCEHENQGPSSQTCSSMNAFAGGCRDSSSLVENDEICYTEINGVSKCEIPAYSVGTSFPVANSNNIAIYGDNLNMSLWKSENESQIKHVKDEVESEYALCSSFIDNVDLNFQDYETYLKEIIGEVSGQQENDSCASFETPFVDADRSSHIATSTDSTICQGSNVSSDYKDQFPSLNCYHGMDYRPVGDNTLGCLPNGVSPQFWTKGEMMKNMKVENVGSFANKSHVSGMQSSTSGEMSFQDCQFRLADSEGPLYFPSGVSFEDRASVQLSASASYMSSEGQSLCFKDGRNELVMPYPYSSQSDYDEFNVGQEVKQLPGIIYDFRKCVDSDTVIKTERADYHQDTINRTANKYPGNMGNLNFKSLDKFLSNGQASIAFQKQFNYYMGEGEEKIIRYKSDDSQLSKGSSERSHIEDDSDICIIEDTSRPEPTSRSAEHGNSLNMAQPSRCGYTQSCMGGGTRPKARDEQYILRVALQDLSQPKSEISLPDGLLAVSLLRHQRIALSWMVQKETSNVYCSGGILADDQGLGKTVSTIALILKERPPVLNTCNDAQKSELQTLNLDADDDLLSENGGVKKEFDTCQDMSSRYPIKTMNLLVPRKGRPSGGTLIVCPTSVLRQWAEELDNKVTCKAKLSVLVYHGSNRTKDPYELAKYDIVLTTYSIVSLEVPKQPLVDKDDEEEGIYEDHTVPSRKRKYPPNSSKRGKKVLDSTMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYEPYAVYTSFCSTIKIPISRSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVDFSQEERNFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVETAKKLPQEEQLSLLNCLEASLALCGICNDPPEDAVVSICGHVFCNQCICEHLTGVDNQCPASKCKTRLSMSSVFSKVTLNSYISNQPSNNLPGSSGSEVGEFEPCSHTHPCDSSKIKAALEVLQSLSKPQCRASKKNYAQHISGQSIDCLRNSYGADSGKSFNDSPESQNLPGERSSDDSVGVAGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQHKKRKMVASAFGEDGTGGQQSRLTVDDLKYLFMM 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0077 1323 ProSiteProfiles Zinc finger RING-type profile. 1007 1046 IPR001841 -
Lal3g0077 1323 CDD SF2_C_SNF 1167 1275 - -
Lal3g0077 1323 Pfam Helicase conserved C-terminal domain 1167 1265 IPR001650 -
Lal3g0077 1323 MobiDBLite consensus disorder prediction 471 496 - -
Lal3g0077 1323 Gene3D - 1149 1323 IPR027417 -
Lal3g0077 1323 SUPERFAMILY RING/U-box 1004 1067 - -
Lal3g0077 1323 MobiDBLite consensus disorder prediction 471 516 - -
Lal3g0077 1323 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 435 1322 - -
Lal3g0077 1323 ProSitePatterns Zinc finger RING-type signature. 1022 1031 IPR017907 -
Lal3g0077 1323 MobiDBLite consensus disorder prediction 1142 1163 - -
Lal3g0077 1323 MobiDBLite consensus disorder prediction 750 777 - -
Lal3g0077 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 891 IPR027417 -
Lal3g0077 1323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 994 1105 IPR013083 -
Lal3g0077 1323 SMART ultradead3 565 868 IPR014001 -
Lal3g0077 1323 Gene3D - 658 752 IPR038718 -
Lal3g0077 1323 Gene3D - 760 892 IPR038718 -
Lal3g0077 1323 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 435 1322 - -
Lal3g0077 1323 SMART helicmild6 1182 1265 IPR001650 -
Lal3g0077 1323 MobiDBLite consensus disorder prediction 750 766 - -
Lal3g0077 1323 MobiDBLite consensus disorder prediction 1142 1159 - -
Lal3g0077 1323 Pfam SNF2-related domain 579 968 IPR000330 GO:0005524|GO:0140658
Lal3g0077 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 899 1322 IPR027417 -
Lal3g0077 1323 CDD DEXDc_SHPRH-like 569 891 - -
Lal3g0077 1323 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1159 1318 IPR001650 -
Lal3g0077 1323 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 584 853 IPR014001 -
Lal3g0077 1323 Gene3D - 539 632 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0077 Lal-Chr3 458338 467277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0077 456 1322 RAD5 or RAD16-like Gene Family AT1G61140 59.326 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal3g0077 SNF2_N 1.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0077 - - gmx:100805307 1795.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0077 3 458338 467277 Lal3g0077 3 458338 467277 ECH
Lal16g0657 16 4236017 4245924 Lal3g0077 3 458338 467277 PCT
Lal15g0596 15 4141070 4153312 Lal3g0077 3 458338 467277 PCT
Lal3g0077 3 458338 467277 Lal16g0657 16 4236017 4245924 PCT
Lal3g0077 3 458338 467277 Lal15g0596 15 4141070 4153312 PCT