Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal3g0077 | ATGGCCGAGGTAGAGGGTTTCGACTTTATGCTGGATGATGTTAACGTCACCGATGATGACGATGATAAACTCGTTATGGATATTGAATCCTTTCTCAGTGTTCTTAATGAGGATTGCGACCCTCTCGAGGGTAGTCCCGATGGTTCTTCATTGAAAAATGTTTCACCCAGTGAATCTGACATCCATGACAATTTTCAGCTTCAAAAGAGGAATTCTATGCTTGACTGTGAACATGAAAACCAGGGACCTTCATCACAGACCTGCTCTTCCATGAATGCATTTGCTGGTGGTTGTAGGGACTCGTCTTCTCTGGTTGAAAATGATGAGATATGCTACACAGAAATAAATGGTGTTTCTAAATGTGAGATACCTGCTTATAGTGTGGGTACAAGTTTCCCTGTGGCAAATTCAAACAACATAGCCATTTATGGAGATAATTTGAACATGAGTTTGTGGAAAAGTGAAAATGAGAGCCAAATCAAGCATGTCAAAGATGAGGTTGAATCTGAATATGCTTTATGCAGCTCTTTCATTGATAATGTTGATTTAAATTTCCAAGATTATGAAACTTACTTGAAAGAAATTATTGGGGAAGTTTCTGGGCAACAGGAAAATGACTCATGTGCATCTTTTGAAACACCGTTTGTGGATGCTGATAGATCATCACATATTGCAACTTCAACTGATTCTACTATTTGTCAAGGCTCCAATGTTTCCAGTGATTATAAGGACCAGTTTCCGTCCTTGAATTGTTATCATGGTATGGATTATAGGCCTGTTGGTGACAACACTTTGGGTTGTTTGCCTAATGGTGTTTCTCCTCAATTTTGGACTAAAGGAGAAATGATGAAAAACATGAAGGTTGAAAATGTGGGGTCTTTTGCCAATAAGTCACATGTGAGTGGCATGCAGTCAAGCACTTCTGGGGAGATGTCGTTTCAGGATTGTCAATTTAGGTTAGCAGATAGTGAAGGTCCTTTATATTTTCCTAGTGGTGTTTCCTTTGAAGACAGGGCATCAGTGCAACTTTCAGCTTCTGCTTCATACATGTCAAGTGAAGGCCAATCCCTTTGTTTCAAAGATGGAAGAAATGAATTGGTTATGCCGTACCCATATTCTTCTCAGAGTGATTATGACGAGTTCAATGTAGGTCAAGAGGTGAAACAATTACCTGGTATCATTTATGATTTTCGCAAGTGTGTGGATAGTGACACAGTTATAAAAACCGAGAGGGCTGATTATCATCAAGATACTATCAATAGAACTGCTAATAAATATCCAGGAAACATGGGAAATCTGAATTTCAAATCCTTGGACAAATTTTTGTCTAATGGGCAGGCTTCAATTGCCTTTCAGAAGCAGTTTAATTATTATATGGGTGAAGGAGAGGAAAAAATCATTCGGTATAAAAGTGATGATTCCCAACTTTCAAAAGGAAGTAGCGAGAGATCCCATATTGAGGATGACTCTGATATTTGCATTATTGAAGACACCAGTCGTCCTGAACCTACAAGTCGGTCTGCAGAACATGGGAATTCCCTTAATATGGCACAGCCTTCTAGATGTGGTTATACCCAATCTTGTATGGGGGGAGGCACAAGGCCAAAGGCACGCGATGAGCAATACATATTAAGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAATTAGTCTACCAGATGGACTGCTGGCAGTTTCTCTCTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAATGTATACTGTTCAGGAGGAATTCTTGCTGATGATCAGGGTCTTGGAAAAACAGTATCAACTATTGCTTTAATATTGAAGGAAAGGCCTCCAGTGCTTAATACTTGCAATGATGCACAAAAAAGTGAATTGCAAACTTTGAATTTGGATGCAGATGATGACTTGCTTTCTGAGAATGGTGGAGTGAAGAAAGAATTTGATACATGTCAGGATATGTCAAGTAGATATCCAATCAAAACCATGAATTTGTTGGTGCCAAGGAAAGGAAGGCCGTCTGGAGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGGCAATGGGCTGAGGAGTTGGATAATAAGGTAACCTGCAAAGCAAAACTTTCTGTGCTGGTTTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATATTGTTCTGACAACTTATTCAATTGTCAGCTTGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAAGAAGGAATTTATGAAGATCATACTGTGCCAAGCAGGAAAAGGAAATACCCTCCTAATTCTAGCAAACGTGGCAAGAAAGTTTTGGACAGCACGATGCTTGAGGCTGTTGCTCGCCCTCTTGCTAAGGTGGCTTGGTTTAGAGTTGTCTTAGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCGTGTTGGGGTCTTCGAGCTAAGCGTAGATGGTGCTTATCAGGAACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGAACCTTATGCTGTGTACACATCATTCTGTTCTACAATTAAGATACCAATCAGCAGAAGTCCATCAAAAGGGTATAGGAAGCTACAAGCTGTCTTAAAGACCATAATGTTACGTCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATTTCCCTGCCACCGAAGTCTGTAGAGTTGAAAAAAGTAGATTTTTCACAGGAAGAACGCAATTTCTATTCTAGACTAGAGGCTGATTCACGTGCACAATTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTCAACATTTTGTTGATGCTTCTGCGCCTTAGGCAAGCTTGCGATCATCCTTTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGACGGCAAAGAAACTTCCTCAGGAAGAACAATTATCTCTTCTAAATTGTTTAGAGGCTTCTTTGGCCCTTTGTGGTATCTGTAATGACCCTCCTGAAGATGCTGTTGTTTCCATCTGTGGTCACGTTTTCTGTAACCAGTGCATTTGTGAACATCTTACTGGTGTTGACAATCAGTGCCCTGCTTCAAAGTGCAAAACTCGACTAAGCATGTCTTCAGTGTTTTCGAAAGTCACATTAAACAGTTACATTTCTAACCAGCCTTCGAATAACTTGCCTGGTAGCTCTGGTTCTGAAGTGGGGGAATTTGAGCCTTGTTCTCATACTCACCCATGCGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAACCACAATGCCGTGCTTCCAAGAAAAATTATGCACAGCACATTTCTGGTCAAAGTATCGACTGTCTTAGAAATTCCTATGGTGCTGATAGTGGTAAATCTTTCAATGATTCTCCTGAGAGTCAAAATCTGCCTGGGGAGAGAAGCTCTGATGATTCAGTTGGTGTTGCAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTGGATTTGCTTGAAGCTTGTCTTAAGAATTCTTCAATTCAGTACCGAAGACTTGATGGAACAATGTCAGTCATCGCAAGAGATAAAGCTGTTAAAGACTTTAACACTCTCCCCGAGGTATCGGTTATGATTATGTCTTTGAAGGCTGCCAGTCTAGGCCTAAACATGGTTGCAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGACCTGTTACAGTTTTGCGGTTAACTGTGAAGGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCATAAGAAGCGAAAAATGGTTGCGTCTGCATTTGGTGAGGATGGAACAGGAGGCCAACAAAGTCGCCTTACAGTGGATGATTTGAAATACTTGTTCATGATGTGA | 3972 | 0.4076 | MAEVEGFDFMLDDVNVTDDDDDKLVMDIESFLSVLNEDCDPLEGSPDGSSLKNVSPSESDIHDNFQLQKRNSMLDCEHENQGPSSQTCSSMNAFAGGCRDSSSLVENDEICYTEINGVSKCEIPAYSVGTSFPVANSNNIAIYGDNLNMSLWKSENESQIKHVKDEVESEYALCSSFIDNVDLNFQDYETYLKEIIGEVSGQQENDSCASFETPFVDADRSSHIATSTDSTICQGSNVSSDYKDQFPSLNCYHGMDYRPVGDNTLGCLPNGVSPQFWTKGEMMKNMKVENVGSFANKSHVSGMQSSTSGEMSFQDCQFRLADSEGPLYFPSGVSFEDRASVQLSASASYMSSEGQSLCFKDGRNELVMPYPYSSQSDYDEFNVGQEVKQLPGIIYDFRKCVDSDTVIKTERADYHQDTINRTANKYPGNMGNLNFKSLDKFLSNGQASIAFQKQFNYYMGEGEEKIIRYKSDDSQLSKGSSERSHIEDDSDICIIEDTSRPEPTSRSAEHGNSLNMAQPSRCGYTQSCMGGGTRPKARDEQYILRVALQDLSQPKSEISLPDGLLAVSLLRHQRIALSWMVQKETSNVYCSGGILADDQGLGKTVSTIALILKERPPVLNTCNDAQKSELQTLNLDADDDLLSENGGVKKEFDTCQDMSSRYPIKTMNLLVPRKGRPSGGTLIVCPTSVLRQWAEELDNKVTCKAKLSVLVYHGSNRTKDPYELAKYDIVLTTYSIVSLEVPKQPLVDKDDEEEGIYEDHTVPSRKRKYPPNSSKRGKKVLDSTMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYEPYAVYTSFCSTIKIPISRSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVDFSQEERNFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVETAKKLPQEEQLSLLNCLEASLALCGICNDPPEDAVVSICGHVFCNQCICEHLTGVDNQCPASKCKTRLSMSSVFSKVTLNSYISNQPSNNLPGSSGSEVGEFEPCSHTHPCDSSKIKAALEVLQSLSKPQCRASKKNYAQHISGQSIDCLRNSYGADSGKSFNDSPESQNLPGERSSDDSVGVAGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQHKKRKMVASAFGEDGTGGQQSRLTVDDLKYLFMM | 1323 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal3g0077 | 1323 | ProSiteProfiles | Zinc finger RING-type profile. | 1007 | 1046 | IPR001841 | - | |
| Lal3g0077 | 1323 | CDD | SF2_C_SNF | 1167 | 1275 | - | - | |
| Lal3g0077 | 1323 | Pfam | Helicase conserved C-terminal domain | 1167 | 1265 | IPR001650 | - | |
| Lal3g0077 | 1323 | MobiDBLite | consensus disorder prediction | 471 | 496 | - | - | |
| Lal3g0077 | 1323 | Gene3D | - | 1149 | 1323 | IPR027417 | - | |
| Lal3g0077 | 1323 | SUPERFAMILY | RING/U-box | 1004 | 1067 | - | - | |
| Lal3g0077 | 1323 | MobiDBLite | consensus disorder prediction | 471 | 516 | - | - | |
| Lal3g0077 | 1323 | PANTHER | HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 | 435 | 1322 | - | - | |
| Lal3g0077 | 1323 | ProSitePatterns | Zinc finger RING-type signature. | 1022 | 1031 | IPR017907 | - | |
| Lal3g0077 | 1323 | MobiDBLite | consensus disorder prediction | 1142 | 1163 | - | - |
Showing 1 to 10 of 26 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal3g0077 | 3 | 458338 | 467277 | Lal3g0077 | 3 | 458338 | 467277 | ECH | |
| Lal16g0657 | 16 | 4236017 | 4245924 | Lal3g0077 | 3 | 458338 | 467277 | PCT | |
| Lal15g0596 | 15 | 4141070 | 4153312 | Lal3g0077 | 3 | 458338 | 467277 | PCT | |
| Lal3g0077 | 3 | 458338 | 467277 | Lal16g0657 | 16 | 4236017 | 4245924 | PCT | |
| Lal3g0077 | 3 | 458338 | 467277 | Lal15g0596 | 15 | 4141070 | 4153312 | PCT |
Showing 1 to 5 of 5 entries