Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0063 ATGAATGACTTATTCTCAAGTTCCTTCAAAAAATACACTGACTTGAGGGAGCAGACTCAGTTTGATGATGTTGAAGCAGGGAAGGAAACCGTAAATCTTGATAAATTCTTTGAAGATGTAGAGAATGTTAAAGAAGACATGAGGGTGGTTGAGAAGCTCTATAGAAAATTGCAGGAGGCCAATGAAGAAAGCAAGATTGTTCATAATGCTAAAACCATGAAGGATCTTCGAGCGCGTATGGATAAAGATGTTGAGCATGTCCTCAAACAAGTTAAGATCATCAAAGGCAAGCTTGAAGCATTAGAGAGATCCAATGCAGCAAATAGAAAGCTCTCAGGGTGTGGTCCAGGTTCTTCAACAGATAGAACAAGAACTTCAGTTGTTAGTGGCTTGGGTAAGAAGTTAAAGGATATGATGGATGATTTTCAAGGGTTAAGAGTAAGAATGCAACTTGAATACAAGGAAACGGTTGAAAGAAGATATTTCACAATAACAGGAGAGAAGGCAGATGATGAAACTATTGAGAATTTGATATCAAGTGGAGAGAGTGAAAGTTTCCTTCAGAGAGCAATTCAAGAACAAGGGCGAGGTCAGATAATGGATACAATATCAGAAATTCAAGAAAGGCATGATGCTGTTAAGGAGATAGAGAAAAACTTGATTGAGTTACATCAAGTGTTTTTGGACATGGCAGCTCTTGTAGAATCTCAAGGCCAACAACTCAATAACATAGAGAGTCATGTAGCACATGCTAGTTCTTTTGTAAGAAGAGGTACTGAACAACTTCAAGAAGCAAGAGAGCATCAAAAGAGCTCTAGGAAGTGGACATGCTATGCCATTATTCTTGGTATTGTTCTCATCATTGTCATATTATTTCCTCTCTTGTCATCAATTTTACCTCACTTGATATTAAGATGA 918 0.3769 MNDLFSSSFKKYTDLREQTQFDDVEAGKETVNLDKFFEDVENVKEDMRVVEKLYRKLQEANEESKIVHNAKTMKDLRARMDKDVEHVLKQVKIIKGKLEALERSNAANRKLSGCGPGSSTDRTRTSVVSGLGKKLKDMMDDFQGLRVRMQLEYKETVERRYFTITGEKADDETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEAREHQKSSRKWTCYAIILGIVLIIVILFPLLSSILPHLILR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0063 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Lal3g0063 305 Gene3D - 194 295 - -
Lal3g0063 305 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Lal3g0063 305 CDD SNARE_syntaxin1-like 202 264 - -
Lal3g0063 305 PANTHER T-SNARE-RELATED 11 296 - -
Lal3g0063 305 Coils Coil 40 70 - -
Lal3g0063 305 CDD SynN 33 190 IPR006011 GO:0016020
Lal3g0063 305 Pfam SNARE domain 240 291 IPR000727 -
Lal3g0063 305 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Lal3g0063 305 SMART SynN_4 28 154 IPR006011 GO:0016020
Lal3g0063 305 PANTHER SYNTAXIN 11 296 IPR045242 -
Lal3g0063 305 SMART tSNARE_6 198 265 IPR000727 -
Lal3g0063 305 Gene3D - 33 160 - -
Lal3g0063 305 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0063 Lal-Chr3 383984 384901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0063 1 304 SNARE and Associated Proteins AT1G61290 78.289 0.0 499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1762 5 19637627 19638544 Lal3g0063 3 383984 384901 LSH
Lal3g0063 3 383984 384901 Lal11g0150 11 992108 993025 LSH