Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0062 ATGGCTTGTGCTTCGTCTTCTTCATCAAAGTTGTTGTGCTTCAATCCTCACTGCAATGAATTCAAATCCGAAAGACCTAACAAAGGTTGGAGACTCCGTACCGGTGACCTAGCTGAGCTTTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTTTGTGACATTTTTCACTCAAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGGAAGGGGATTCATTGTGGATGTATTGTTTCAAGTCATGCCTTTGTGTTGTTGGATCATGGAGGAATTGAATGCTTTGCATGTGCCCGCAAACATATTCTTTTGCCGTCTAACCCAACACGGCCATCATCTTTTTCCCTTCAAAATCGTTTATCTGAGAGACTTAGAGATCCGTCTGCAAGAAGTTGGAGTCAATTAGTTGGATCAGGGCATGTACCATGGAAGCAAGAACCCAATCTGTTCAATTCCGTTTCTTCATCCAACCTGCATCCAGATGTGTCTCCTCATGAAAGGTTACCTGCCTCTTCCTTGGAGAATAAAAATGAGGACTTGTGTGGAATATCAGTTAATTGGAGCGCTAATTTTGGTCCACAGGAAATGATGCTTATGAATGGATTTAGGAATGGAGACAAATCAAGTTCATGTTTAAATATTTGTCAACAGCCTCCTTTTCTGAAGGAAGATTCGTCCCCTCAACCATTTGCTCTGTCTGTACCTTATGCGTCTCCAAATGAAATAAATGGTCAAATTGGAGCCGTTGGAAGTCATCCACAACAAACTACACCTCTTCCAGGAAAACAATTTAGTGACACTCTGCATTTAGCACTGGAATCCTCACCTGAAGCTCAGGTTCGTAGTGGACGACCTCGAGCAGATGCCAGAGGAAGAAACCAGTTACTGCCACAGTATTGGCCTAGGTGTACTGATCTGGAGCTACAGCAAATAATCATCGATTCTACTTCTGTAATTACTCCCTTGTTTCAAAAGACCTTGAGTGCTAGTGATGCTGGGAGAATTGGGCGTTTAGTGCTTCCAAAAAAGTGTGCTGAGGCCTACTTCCCATCAATTACCCAGCCTGAAGGGTTGCCACTTAAAATCCTCGATGCCAAAGGAAAAGAATGGATATTTCAGTTTCGCTTCTGGCCCAACAATAACAGCAGAATGTATGTGTTAGAGGGTGTCACTCCCTGCATACAGTCCATGCAGTTGCAAGCAGGTGATACAGTAACATTTAGCCGGCTGGAGCCAGAAGGGAAGTTGGTTATGGGATTTAGAAGGGCTACAAATGCTACGCCCTCCGACCAGGACAATGAAACAAATAAGACCGGAAATGGATTTTCTGCACTTGGCGAGGTTGAACTGGCTGATCCTAGTTCATGGTCTAAAATTGATAAGTCAGGATACATAGCAAAAGAAGTGCTGGAGATCAAATCTTCAATCAGAAAGAGGAAAAGCAGCATGTTGGGTTCAAAGAGCAAAGATATGAAGATCGAAAATGAGGATCTAATAGAGCTGAAGATTACACGGCAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAGCCATGTTGCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTGCTTGGGAAGCCAACAATTTTCACCACTGATAATATGGGTGAAAAGGTCCAGTGGGCTCAATGTGAAGATTGTCTTAAGTGGCGTAAATTGCCAGCAAGTGCGCTTCTTCCATCAAAATGGATGTGTTCTGATAATTTGTGGGATCCAGAAAGATCTTCTTGCTCAGCTGCACAAGAGCTGACAGCAGAACAACTTGAGAATTTGCTACCCCCTTGTACTTCAGCTGTTTCCAAGAAAATGAAGGCAGCCAAGCAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTTGACAGACTTGCAAATCTAGCTATCATGGGAGAGGGCGAGGCACTTTCAGCATCTTCCCAGGCCACAACTAAACACCCACGGCATAGACCTGGCTGCTCTTGCATTGTTTGCATCCAGCCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTATGTTCAACAGTGAAGCGCCGTTTCCATACCCTTTTGTTACGTCGTGAGAAGAAACAATCGGAAAGAGAAGCAGAGACAACACATAAAAAGCAGCAACCTCAGCCATTACCTTCGTCTGAAATTTTACTTGATGATGATTCCCTGCTTTGTAGTAACACATGTGATAGCAGCGGGCCTAACCTGAACAAGGACGGCAATGGTGGTTCAGATGATGATCTTATCATGATAAAATCATCTGCTCTGCCATTCAAAGGCCGGATTGACCTCAACATCCAGCCAGAGCGAGAAGAAGAGTTTTCACCCCGTTCAGATTCTGGTGGTATGACTAAGTTGCCCCATGATACTACTGATATGCATCTGAAGCAGCTGGGTATGTTGAACTCTATTACTGGAGACACATCTGGAAGTCAGACACAGCAGATTGGAGATGGAGTGAGGGATGAGAAACTTGGTAATGGTTTATCCCATGGCAGTGGTTGTCATGATGCTGATAAGGAACATGCACAAGCTTTGCCTATGAATGTGTGA 2601 0.4444 MACASSSSSKLLCFNPHCNEFKSERPNKGWRLRTGDLAELCDRCGSAFEEGRFCDIFHSNASGWRNCETCRKGIHCGCIVSSHAFVLLDHGGIECFACARKHILLPSNPTRPSSFSLQNRLSERLRDPSARSWSQLVGSGHVPWKQEPNLFNSVSSSNLHPDVSPHERLPASSLENKNEDLCGISVNWSANFGPQEMMLMNGFRNGDKSSSCLNICQQPPFLKEDSSPQPFALSVPYASPNEINGQIGAVGSHPQQTTPLPGKQFSDTLHLALESSPEAQVRSGRPRADARGRNQLLPQYWPRCTDLELQQIIIDSTSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPSITQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRRATNATPSDQDNETNKTGNGFSALGEVELADPSSWSKIDKSGYIAKEVLEIKSSIRKRKSSMLGSKSKDMKIENEDLIELKITRQEAQGLLRPPPSHVASIVVIEGFEFEEYEDAPVLGKPTIFTTDNMGEKVQWAQCEDCLKWRKLPASALLPSKWMCSDNLWDPERSSCSAAQELTAEQLENLLPPCTSAVSKKMKAAKQDPDNAEALEGLDRLANLAIMGEGEALSASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCSTVKRRFHTLLLRREKKQSEREAETTHKKQQPQPLPSSEILLDDDSLLCSNTCDSSGPNLNKDGNGGSDDDLIMIKSSALPFKGRIDLNIQPEREEEFSPRSDSGGMTKLPHDTTDMHLKQLGMLNSITGDTSGSQTQQIGDGVRDEKLGNGLSHGSGCHDADKEHAQALPMNV 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0062 866 CDD B3_DNA 322 423 IPR003340 GO:0003677
Lal3g0062 866 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 9 797 - -
Lal3g0062 866 ProSiteProfiles Zinc finger CW-type profile. 551 601 IPR011124 GO:0008270
Lal3g0062 866 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 9 797 - -
Lal3g0062 866 Pfam B3 DNA binding domain 324 424 IPR003340 GO:0003677
Lal3g0062 866 MobiDBLite consensus disorder prediction 707 730 - -
Lal3g0062 866 MobiDBLite consensus disorder prediction 820 834 - -
Lal3g0062 866 MobiDBLite consensus disorder prediction 820 866 - -
Lal3g0062 866 Pfam CW-type Zinc Finger 556 598 IPR011124 GO:0008270
Lal3g0062 866 SMART B3_2 324 425 IPR003340 GO:0003677
Lal3g0062 866 Gene3D - 555 608 - -
Lal3g0062 866 Gene3D - 302 428 IPR015300 -
Lal3g0062 866 SUPERFAMILY DNA-binding pseudobarrel domain 321 423 IPR015300 -
Lal3g0062 866 ProSiteProfiles B3 DNA-binding domain profile. 324 425 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0062 Lal-Chr3 373343 383169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0062 12 709 B3 DNA Binding Superfamily AT4G32010 45.161 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal3g0062 B3 3.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0062 - - gmx:100807252 1391.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0062 3 373343 383169 Lal11g0149 11 982571 991111 LSH