Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0050 ATGGAGATTTCATCAATCATAGGGTTGCCTGAACTGGGGATAATGGAGGATCCTAACTTTTTCAATCAGTGGAACATAAGCTCTATCGATACAAATAGCTTATCAGGTTCTACTTTTGGAGAGACCTTACAAAAACGTTCATTCTCAAACTCAAACTTCAACCCCAAAACTTGCATGGAAAGTGAAAAACCTGAAAAACAGTTCAAAAGCAACTGGTGTAACAACAGAAATCCCCAGACATCAGAGGCACAATTTGCTTCTAATTACTCAAATCTTCTTTCATTTGTTGATTCTAATTATTACACAAGTGAATTGGGACTAGAGAGGCCTAAGGTGGATATGGTGTGTCCCAAAGTTGAAAACAAGATAGCTCAGGAAACATTTGGGCATCAAAACTTTGTCTTCCAAGAGGCCAAAATGATTGGGACACGTCCTAAACATTCCACACCTCATGAACATGTGTTAGCTGAAAGGAAGCGGAGAGAGAAGCTCAGCCAGAGGTTCATTGATCTATCTGCCCTTATTCCTGGCCTTAAAAAGATGGATAAAGCTTCTGTTCTTGGAGATGCTATAAAGTACTTGAAGCAAATGCAAGAGAAAGTGAATTCTCTTGAGGAGGAAAAGAACAGGAAAAAAACTGTAGAATCTGTAGTATTTGTGAAGAAATCTATTCTATCAAATACTGATGATTTAGACACAGGTGGTTCCTTTGATGAGGCACTACCTGAAATTGAAGCAAGAGTTTGGGAAAGAAATGTGCTCATAAGAGTTCACTGTGAGAAGAAGAAAGGAGTTATAGAAAAAACAATCAGTGAGATTGAGAAACTCCATCTAAAAATCATTAATACAAGTGCCTTAGCATTTGGTAGTTTTGTCCTTGATATAACCATCATTGCTCAGATGGAGGTGGAATTTAGCATGACAGTGAAGGATCTGGTGAGAGAACTACGTTCAGGTTTTGCATATTTCATGTGA 975 0.3815 MEISSIIGLPELGIMEDPNFFNQWNISSIDTNSLSGSTFGETLQKRSFSNSNFNPKTCMESEKPEKQFKSNWCNNRNPQTSEAQFASNYSNLLSFVDSNYYTSELGLERPKVDMVCPKVENKIAQETFGHQNFVFQEAKMIGTRPKHSTPHEHVLAERKRREKLSQRFIDLSALIPGLKKMDKASVLGDAIKYLKQMQEKVNSLEEEKNRKKTVESVVFVKKSILSNTDDLDTGGSFDEALPEIEARVWERNVLIRVHCEKKKGVIEKTISEIEKLHLKIINTSALAFGSFVLDITIIAQMEVEFSMTVKDLVRELRSGFAYFM 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0050 324 Coils Coil 187 214 - -
Lal3g0050 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Lal3g0050 324 Gene3D - 146 219 IPR036638 GO:0046983
Lal3g0050 324 Pfam Helix-loop-helix DNA-binding domain 153 198 IPR011598 GO:0046983
Lal3g0050 324 SMART finulus 154 203 IPR011598 GO:0046983
Lal3g0050 324 PANTHER BHLH TRANSCRIPTION FACTOR 2 323 - -
Lal3g0050 324 CDD bHLH_AtNAI1_like 152 223 - -
Lal3g0050 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 212 IPR036638 GO:0046983
Lal3g0050 324 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0050 Lal-Chr3 298261 300524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0050 148 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.005 4.73e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal3g0050 HLH 9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0050 - - gmx:100798018 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0050 3 298261 300524 Lal3g0050 3 298261 300524 ECH
Lal23g0998 23 11870393 11875095 Lal3g0050 3 298261 300524 PCT
Lal3g0050 3 298261 300524 Lal23g0998 23 11870393 11875095 PCT