Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0044 ATGAAAATAATGAGTTCTGAAGGTGTCAATGAAGATTGCATAGGATGGGCTGCAACAGATTCATCAGGAGTTCTATCACCTTACAAATTCACTCGCAGGGCTGTTGGGGAGGATGATGTTTATATTAAGATTACACACTGTGGTGTTTGTTATGCTGATGTTATTTGGACAAGGAATTATCACCATGACTCTAAGTATCCTGTTGTGCCTGGACATGAGATTGCTGGGATTGTGACAAAGGTTGGTTCAAATGTCCATCGTTTCAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGCAGGGATTGTGAGTATTGTAATCACAGAGCAGAAATTAATTGTGTCAAGGGTTCTGTTTTTACTTTCAATGCTGTTGATGTTGATGGCACAATTACAAAAGGAGGATACTCAAGTTACATAGTAGTTCATGAAAGATATTGCTTTGTGATACCGAAAAATTATCCATTGGCCTCAGCAGCTCCTTTGCTTTGTGCTGGAATTACAGTTTATTCCCCGATGATACGCCACAAGATGAACCAACCTGGTAAATCTCTAGGAGTGATTGGTCTTGGTGGCCTCGGTCACATGGCAGTGAAATTTGGAAAGGCATTTGGATTGAATGTAACAATTTTGAGTTCTAGCATATCCAAGAAAGAAGAGGCCCTGACTCTGCTTGGTGCAGACAAATTTGTACTATCATCTGATCAGGAGCAGATGAAAGCATCAGCTAAGTCATTGGATTTCATAATAGACACAGCATCTGGTGATCACCCTTTTGATCCTTATATGTCATTGTTGAAGACATATGGTGTTTTTGTCCTGCTTGGCTTCCCAAGTGTAATCAAATTCAGCCCTGCAAACCTTAATATAGGGATGAAAACCTTTTCTGGAAGTGTTACAGGTGGTACAAAAGATATTCAAGAGATGATTGACTTTTGTGCTGCAAAAGAGATTTTCCCAAACATAGAAGTGATTCCAATTGAGTATGTCAATGAAGCTATTGACAGGGTGCCCCAGATGCAGAGTCTAAGTCATTTTTGTTTATCGTTTGTCTTTGGATTATACCAAAAGTTTCTTCATTTCTCTCTCACTTTGATGGATTTTGCTTCAACCTTCAAGTTCCTGACCCATGCCAGCGAGGTTGGTTGTGGCTTTGTCCTCCTCGGTAGTTACTCCCCCATACTCGGCCTTCTATTCATATTCCTTTTCTCTTATAAGATTCTTCGTTCTCGTTCGAGTGCCCATGAGTTGTTAGAGTTCCGTTTTGGTTTGGAAGGTTCAAAGGTTGAAACTTTGAGGAATGAGACTTTGAAATCCATTTCTGGGGTGGAAGAGAAAGAGAAAGATGAGAACATTGAAGATGAGGTGTTGGATGTAATGACGCTGAGGGAATTAGTGAAAATTGAGAGACATAGGTGCCATGCTGCGTGTGCTGAGATTGAAAAGGAGAGGGTAGCGGCCTCTTCTGCGGCGGAGGAGACAATGGCTATGATTTTGAGGCTGCAAAGTGAGAAAAGTTCGATCGATATTCAAGCGAATCAGTTCCGGAGAATGGTAGAGCAGAAGCAGGATTATGATCAGGAAGTGATTGAAGAGTTGAGGTGGGTTATTATGCAGCATGAATCTCAGAACAGATTGTTGGAAGATCAGTTGGGAATTTACAGGGAGAAACTGAGGGAACATATGAGTGATGATGAAATGGACCAGCTTCAAGGAGTTGATACATCTAAAGGCTTTTTGAATTTCTCTGTTGAATTTGATAACATAGATGCTTCTTTAGAAACTCATTTACAGACCTTGTAA 1812 0.4073 MKIMSSEGVNEDCIGWAATDSSGVLSPYKFTRRAVGEDDVYIKITHCGVCYADVIWTRNYHHDSKYPVVPGHEIAGIVTKVGSNVHRFNVGDHVGVGTYVNSCRDCEYCNHRAEINCVKGSVFTFNAVDVDGTITKGGYSSYIVVHERYCFVIPKNYPLASAAPLLCAGITVYSPMIRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTILSSSISKKEEALTLLGADKFVLSSDQEQMKASAKSLDFIIDTASGDHPFDPYMSLLKTYGVFVLLGFPSVIKFSPANLNIGMKTFSGSVTGGTKDIQEMIDFCAAKEIFPNIEVIPIEYVNEAIDRVPQMQSLSHFCLSFVFGLYQKFLHFSLTLMDFASTFKFLTHASEVGCGFVLLGSYSPILGLLFIFLFSYKILRSRSSAHELLEFRFGLEGSKVETLRNETLKSISGVEEKEKDENIEDEVLDVMTLRELVKIERHRCHAACAEIEKERVAASSAAEETMAMILRLQSEKSSIDIQANQFRRMVEQKQDYDQEVIEELRWVIMQHESQNRLLEDQLGIYREKLREHMSDDEMDQLQGVDTSKGFLNFSVEFDNIDASLETHLQTL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0044 603 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Lal3g0044 603 Pfam Zinc-binding dehydrogenase 195 317 IPR013149 -
Lal3g0044 603 PANTHER - 5 341 - -
Lal3g0044 603 Pfam Zein-binding 464 554 IPR007656 -
Lal3g0044 603 ProSiteProfiles GTD-binding domain profile. 460 558 IPR007656 -
Lal3g0044 603 Coils Coil 533 560 - -
Lal3g0044 603 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Lal3g0044 603 SMART PKS_ER_names_mod 23 348 IPR020843 GO:0016491
Lal3g0044 603 Gene3D - 16 344 - -
Lal3g0044 603 Gene3D - 168 323 - -
Lal3g0044 603 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 321 IPR036291 -
Lal3g0044 603 CDD CAD1 15 340 - -
Lal3g0044 603 PANTHER ALDEHYDE REDUCTASE 5 341 - -
Lal3g0044 603 SUPERFAMILY GroES-like 19 186 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0044 Lal-Chr3 273753 277463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0044 5 340 Monolignol Biosynthesis Gene Families AT1G72680 74.702 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0044 K00083 - gmx:100807617 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0044 3 273753 277463 Lal3g0044 3 273753 277463 ECH
Lal3g0044 3 273753 277463 Lal11g0101 11 655898 657770 LSH
Lal16g0628 16 4026631 4027467 Lal3g0044 3 273753 277463 PCT
Lal15g0550 15 3825872 3826983 Lal3g0044 3 273753 277463 PCT
Lal3g0044 3 273753 277463 Lal16g0628 16 4026631 4027467 PCT
Lal3g0044 3 273753 277463 Lal15g0550 15 3825872 3826983 PCT