Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0042 ATGGACGGTGGGGGAAGAGCGGAGGCGGAACGGTGGCTATACACCGCGAACAAGCTTTTAACGGCACGTGACTTGCACGGGGCTCGCTCATTTGCGATCCGTGCCCGAGAATCCGACCCGAGATTCGACGCGACGGAGCTCTTACTAGCGGTGATTGACACGCTCCTCGCCGGTGAGGCGCGGATCAGTGACCATTTACTGGATTGGTATTCAATTCTTCAGGTGCTCCGATACACACAGAGTATTGAGTACATAGCAGCTCAGTATCGCCGCCTCGCTATCCTCCTTGACCCTCACCGTAACCCTTTTGCTTTCGCTACTCACGCGTTTCAGCTCGTGCATGACGCTTGGTCTGTTCTCTCAAACCCTAACAAGAAAATTGTTTATGATAATGACCTTAGATTGTTGACTGAACCACCGCAGCAACCACCGCCTCCTCCCGCTCCAGCACCGGTTCCTCCGATGGTTACCGGTTTTCAGTTTTCGCCACCGAGGCAAATCCAAAACCAGCATCACCACAATCAGAATGAGAATCAGAATCAACACTACCAGAATCAGCACCAGAGTCAACAGCAACAGCAGCAGGTCCAAATTAGGAAAAACCCTAAGTCTGTAAATCAGGCTAGGGTGGTGGTTGTTGAGGAAGAGACACATAATCAGAATCGGAGTCTGGACAATGTGACTGAACCTGAACCGGTTCGGGTGGACCGGACTGGTGACTCAACCCAGACTCAGTCTGTGACTGAGAATGTTATACAGAGTTTTTGGACTGCATGTCCTTATTGTTATGTTATGTATGAGTATCCTAAGGTGTATGAGGACTGTACCCTCCGGTGTCAGAATTGCCGGAGGGGGTTTACTGCGGCAGTGGTTAGGGCACCACTGAATTTGGGTGAGAATGATGATAGGTATTGCAGTTGGGGGTTTATACCATTAGGGTTTTCGGGTAATTTCAAAGATTTAAGTGGGGGTTCATCTGATTGGAACCCATTTTCGCCTTTGTTTCCTTGTCCTTTAAAGGGCGGGTCTACCAGGAAGGGCCGGAAGGGGCCTGTGGCTTACTATGACCAGGAAGCATGTGTGGCGTTTGTGGAGAAAGAGCTTTCGGATAGTAGCGATGATTCCGATGATGGGGACTGGCGAAATACTTACACTAAGAGATTGAGGAAGAGGGCGAGGGGGATTGGAAGAAGGACAGGCTTTGCTTCTGCTAGTGGTGTTGTTAGGAGGTTAAAAACTGACAGGTCGAAGAAGGGAGTTCGGAATAATGTAGGGGATGTCAACGTGGCCAATGGTGAGGCTGTTAATGGTCATGGTGGTGGGCCTGCACCTGCAGTGGCAGTTGCTGCGAGGCCGGAATCGAGCAAGAAGGCTGCACTGGTTGGTGCTAGGAGGAGGGGTGCAGCAAACTTGGGGAAGTTGGACTTGAATGTGGAGTTTAGCAATGAGGTGGATGAGCATGCACCCGGAGCAAGTGAAGGGAATGGCATGAATGGCAATGGGAATGTGCCTGGGACTGGAAATGCTGAGGATAATATCGAAGGCATTGGGTTTTTTGAGGGGCTTGATGAGTTCCTCAGTAGCTTACCCATTCTCAATGTTGTTGCAGATGATAAGGTTAAGGGTCATTAG 1632 0.5025 MDGGGRAEAERWLYTANKLLTARDLHGARSFAIRARESDPRFDATELLLAVIDTLLAGEARISDHLLDWYSILQVLRYTQSIEYIAAQYRRLAILLDPHRNPFAFATHAFQLVHDAWSVLSNPNKKIVYDNDLRLLTEPPQQPPPPPAPAPVPPMVTGFQFSPPRQIQNQHHHNQNENQNQHYQNQHQSQQQQQQVQIRKNPKSVNQARVVVVEEETHNQNRSLDNVTEPEPVRVDRTGDSTQTQSVTENVIQSFWTACPYCYVMYEYPKVYEDCTLRCQNCRRGFTAAVVRAPLNLGENDDRYCSWGFIPLGFSGNFKDLSGGSSDWNPFSPLFPCPLKGGSTRKGRKGPVAYYDQEACVAFVEKELSDSSDDSDDGDWRNTYTKRLRKRARGIGRRTGFASASGVVRRLKTDRSKKGVRNNVGDVNVANGEAVNGHGGGPAPAVAVAARPESSKKAALVGARRRGAANLGKLDLNVEFSNEVDEHAPGASEGNGMNGNGNVPGTGNAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0042 543 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 1 155 - -
Lal3g0042 543 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 188 543 - -
Lal3g0042 543 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Lal3g0042 543 MobiDBLite consensus disorder prediction 487 509 - -
Lal3g0042 543 MobiDBLite consensus disorder prediction 138 158 - -
Lal3g0042 543 Gene3D DnaJ domain 67 221 IPR036869 -
Lal3g0042 543 Pfam DnaJ domain 68 130 IPR001623 -
Lal3g0042 543 ProSiteProfiles dnaJ domain profile. 68 133 IPR001623 -
Lal3g0042 543 CDD DnaJ 68 122 IPR001623 -
Lal3g0042 543 SMART dnaj_3 67 125 IPR001623 -
Lal3g0042 543 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 155 - -
Lal3g0042 543 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 188 543 - -
Lal3g0042 543 SUPERFAMILY Chaperone J-domain 64 133 IPR036869 -
Lal3g0042 543 MobiDBLite consensus disorder prediction 136 242 - -
Lal3g0042 543 MobiDBLite consensus disorder prediction 406 446 - -
Lal3g0042 543 MobiDBLite consensus disorder prediction 161 204 - -
Lal3g0042 543 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0042 Lal-Chr3 250125 251756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0042 8 542 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 35.273 4.63e-72 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0042 - - lang:109345659 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1804 5 19938492 19940117 Lal3g0042 3 250125 251756 LSH
Lal15g0538 15 3725515 3727550 Lal3g0042 3 250125 251756 PCT
Lal23g1011 23 11970549 11971946 Lal3g0042 3 250125 251756 PCT
Lal3g0042 3 250125 251756 Lal15g0538 15 3725515 3727550 PCT
Lal3g0042 3 250125 251756 Lal23g1011 23 11970549 11971946 PCT