Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0037 ATGGCCACCGCCACCAACCCACAACCACCACCACAACAACTGCAAACACTGAACTTAGAGTCTCTTTCAGGCATAGACTCAACCACTCTGTCACAGTCTGAAATCCATGCTCTCTCTCTCTGCTCTCTCTCCACCTTTGATCTTCGCTCTACGCGTCACATCGTCACTCCCACAATCGATCCTTCCTTCTTCAACGAGAGCTCCGGTACCCACCGGCAAACTTACTCCCGCCGCCGCCGCCTCCCCGCCACCGACGACGTCGTCACTGATAGCAACACCGATAACCGCAGAATCATCGACTATTTAAAGCAGTTGATCAGAGAAGACCCGAAGTTCGATCAAATCGAGCTTCTGCAACCTTGTGTCCACACAGAGGTTGTTGCTCCGATTAAAGAAGTGAGAGTGGGAACGGAGTTAGGGTTAGTGAGGAAGAGGAAGAGAGGGAGGAAGCCGAAAGTGAAGGTGAATTTGGATGAGTGTTACAGAGGGATACAGATTGTGAATAAGAATGGTGTTGCTATTGATTTTTCGGCTTTGGCGGTTGTGGAGGATCCGTATGCGGAGGAGTTGAGGAGAAAGACTGAGGGGTTGAAGAGTGAGGAAGAGCTGTTAGGATTTTTGAGGGATTTGGAGGGGCAATGGGGAAGTAGGAGGAGGAAGAGGAAGATTGTTGATGCTGCGAGTTTCGGTGATGTGTTGCCGTGTGGTTGGAAGCTTTTGCTTGGGTTGAAGAGGAAGGATGGCCGCGCTTGGATCTATTGCCGCAGATACTTGAGCCCCACTGGACAGCAATTTCTGTCTTGCAAAGAAGTTTCTTCATATTTGCAGTCTCTTTCCACTCATAGTGACACACAGTTACAAATCAGTCTTTGGAGTGAAAATATGCTGCAGGAAGATAGAATGACTATTAAGGAACATACAGACACAGTGACTATTGAAAACTCTGCAGGTGTTACCCTTGAGGATCAAAATCAACTGCAGATTGTTGTAGCTAACTCAGATGTGCCCTGTTTATCTGTTTCTAATGAACGGTTGAAGGAAGTGGCCTTATTGGGGATTGACAATCTTGCAGATGTGCAAATACATGACCTATTTGAATGTCATAAATGCAACTTGAGCTTTGATGAGAAGGATACATACTTGCAGCACTTATTGTCTGTTCACCAGAGGACAACAAGGCGTTACCGACTTGGTTCTTCTGTTGGAGATGGGGTTATCATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCAGGAAAGGCGTCGCTACAACGGTCACGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTCACCAGGCCTGGCAAATGTCCAAATGAGTGACAATTCTCCAGTCCGGGAGGAGATACATTCAAGGATCTCTAAGATGGATGCTCTTATTGAAATTGCTCAAAACTCTATCATGGAACCCCATACTTCAGCTGAACTTAATTTAATTCCTCCTTTGGAAATTTCTGTTGACGACTTAGATCAAGACATAAACATGGAGTTTCCTATTTGTGAACAGCGAATGAAATCTTGCCTGACTGGCAAAAATGTGGTTGAAGATTTAAATCAGCAAGATTATTCTCATTTACTTGGGGAAGGGGAAGTAGAGGAAATTGATGTTGACAACCAGGTTATAGATGCAAAGATGGTTACTTGTCTAGATAACATGGGTTTGTTTTCTGTAAATGAGCAAAATGGCATTACATCTAATATTTATATGGGAAAGGATGATGTGGAATTGACTGTTGAGGGGTTTGATCAGTATGGGATTGATTTGAAAAGTGTTTCTCAAATCCATTTATTTCATTTATCTGGCAATCACATGATACCCGAATCTGAGAAGAATGAAGACCCTGGCAGCTGCACTAATGCCAAGTGTCAGTTTAAGCTTGATGGAGACAGTAGTAACAAGAGTGAGTTGAATATTGGTTTTGATGGCTGCATGGATGTACCTGTTAGCATTAATGTTCAATCGACAATGATGCCAGCTTCTTTAGAAAATGCGGTGCATTCAAGGGATTCTAAGCAAGCTATATCCACAAAGCAATATTTGGATTGTTTTCCTTTGATCAGCTCAGATAAGGGTGGAAAACAATATTGCACTGTTGACCATGAGTATGATAATACGAAGGGGTTCCAGGAACTTAGGTCGGATGAAATAGACCTTCAGTACAATTTTGCAAGTGGTCAAAATTCTCTTTCTCTGCTTGATGTGACAACTGAGTTGGCAAACGACACGGTGATGGAAGGGATGCATTCATCCCCAATTCTTTTTGAATCACAAGAAGTTACGATCAAAATGGGTGGCAGAAATCAGCTTACGGCCGCGTGCGTGTGGTGTGGAATAGACTTTAACCATGATGCTGTTGATTATGAAATACAGCCAGATTCTGTTGGATTCATGTGTCCAGCATGTAAGGGAAAGATCTCTGGTCAAATCAATGTGATGGACAGTGGATCACTGCATGCTGACCATATTTAA 2511 0.4341 MATATNPQPPPQQLQTLNLESLSGIDSTTLSQSEIHALSLCSLSTFDLRSTRHIVTPTIDPSFFNESSGTHRQTYSRRRRLPATDDVVTDSNTDNRRIIDYLKQLIREDPKFDQIELLQPCVHTEVVAPIKEVRVGTELGLVRKRKRGRKPKVKVNLDECYRGIQIVNKNGVAIDFSALAVVEDPYAEELRRKTEGLKSEEELLGFLRDLEGQWGSRRRKRKIVDAASFGDVLPCGWKLLLGLKRKDGRAWIYCRRYLSPTGQQFLSCKEVSSYLQSLSTHSDTQLQISLWSENMLQEDRMTIKEHTDTVTIENSAGVTLEDQNQLQIVVANSDVPCLSVSNERLKEVALLGIDNLADVQIHDLFECHKCNLSFDEKDTYLQHLLSVHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFQERRRYNGHVGIHVRNYVRKVEDSPGLANVQMSDNSPVREEIHSRISKMDALIEIAQNSIMEPHTSAELNLIPPLEISVDDLDQDINMEFPICEQRMKSCLTGKNVVEDLNQQDYSHLLGEGEVEEIDVDNQVIDAKMVTCLDNMGLFSVNEQNGITSNIYMGKDDVELTVEGFDQYGIDLKSVSQIHLFHLSGNHMIPESEKNEDPGSCTNAKCQFKLDGDSSNKSELNIGFDGCMDVPVSINVQSTMMPASLENAVHSRDSKQAISTKQYLDCFPLISSDKGGKQYCTVDHEYDNTKGFQELRSDEIDLQYNFASGQNSLSLLDVTTELANDTVMEGMHSSPILFESQEVTIKMGGRNQLTAACVWCGIDFNHDAVDYEIQPDSVGFMCPACKGKISGQINVMDSGSLHADHI 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0037 836 Gene3D - 211 316 - -
Lal3g0037 836 ProSitePatterns Zinc finger C2H2 type domain signature. 414 434 IPR013087 -
Lal3g0037 836 Pfam Methyl-CpG binding domain 232 279 IPR001739 GO:0003677
Lal3g0037 836 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 15 825 - -
Lal3g0037 836 ProSitePatterns Zinc finger C2H2 type domain signature. 367 388 IPR013087 -
Lal3g0037 836 ProSiteProfiles Zinc finger C2H2 type domain profile. 412 439 IPR013087 -
Lal3g0037 836 ProSiteProfiles Zinc finger C2H2 type domain profile. 365 393 IPR013087 -
Lal3g0037 836 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 15 825 IPR037472 -
Lal3g0037 836 SMART c2h2final6 412 434 IPR013087 -
Lal3g0037 836 SMART c2h2final6 365 388 IPR013087 -
Lal3g0037 836 Gene3D Classic Zinc Finger 361 453 - -
Lal3g0037 836 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 223 295 IPR001739 GO:0003677
Lal3g0037 836 SUPERFAMILY DNA-binding domain 228 283 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0037 Lal-Chr3 218996 224350 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal3g0037 MBD 2.2e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0037 - - lang:109329666 1242.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1816 5 19974296 19990739 Lal3g0037 3 218996 224350 LSH