Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0033 ATGGGGGACGCTGCTTCTTCCGGATTGGGTCATCGACTAGATATTCAGCAATTACAAATTGAAGCCCAGCACCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCATATTACACCAGAACCTCATAACAGGCCACCGAGTGGTTCACTTTTTATTTTTGATCGTAAGGTTTTGAGATATTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTGGGAAGTATTGATGCATTACATTGCTACTATGCCCATGGAGAAGATAATGAAAATTTTCAGAGGCGAAGCTACTGGATGCTTGAACCAGATATGATGCACATAGTTTTTGTTCACTACTTGGAAGTTAAGGGTAACAAGACAACTATTGGAGGAATTAAAGAAAGTGATGACGTCACATCAGATTCCCGAAAGGTCACCTCTCCATCGTCTGGCTTTCCCTCAAATTATAGCTCTGCACCTTCACCGAGTACAGATTCTATGAGCCCAACTAGCAGCCTGACATTTTCACGTGAAGATGCTGATTCAGAGGATATTCACCAAGCAAGTTCTGGATTACGGCCATCACGCGAGTCACAACATATGGGGAGCGGTATTCTAACGGACAAGCTTAATGCTGGTTTCAACAGTTCATATCTTCTTCATCCCATTTCAGGTGATCATGGACTGTCATCAACTTCTGGAACAGAGTATATCCCATTTGCTCCAGGGGATAAATTTAGAGGAAATGATACTACTTATATTGATGATCAGAAAGCACATGGCATGGCATCCTGGAACAATGTCTTGGAGCAATGCACTACGGAATTGCATACTGATCCTTCTCTTATATCATTTCCTTCCACCCCATCCAGTTTGGTGGGTAACATTCTTGATCAAGAACATAACTTTTTCAGTGACCTTTTAGCGGGTAGAAGTGGCCTCACTGAGGAGGCAGAGAGCTCTCAGTCTCTGCAATCAAATTGGCAGATTCATTTTGAAGACAATTCAGGGAACTTGCCAGCCATAACCCAATCATTGAGTTTGGATTTTGGATTTGAATATAGCACTGATTTACTAGGGAATGAAACTCATAATGTAAGTTCTGAAATTGCTCCCAACCTGTTTAGTTTTCATGGTACGCAAAAAGAGCAGTCTGTGCAGCAATACTATCCAGAACAGCATGCAGATGGACAATCTCAACTTGCAAAATCCAATTCTGTGAATAAAGTTCCTGGTGAAGAAAGTATCAACCATGCCTTCACTGTGAAGCGCACATTATTGGATCGAGACGAAAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGGTTAGTAAAGAACTTGGGGAGGTTGATGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGCACGGATGAATGTGGGCATGTGATAGATGATGCCTCATTGAGTCCATCCCTTTCCCAGGATCAGCTGTTTAGCATACATGATTTTTCACCTAAATGGGCTTACGCTGAATCAGAAACTGAGGTTTTGATAATTGGAGCATTTTTGAAGAGTCAACCTGAGGTGACAACCTGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCTGAGGCTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCTTAAGATTGGACGGGTTCCTTTCTATGTTACATGTTCCAATAGGTTAGCTTGTAGTATCTATGACAGTTCATCTGATTTGTTGCTTCATTTGCAACTGGAGGAGTTGCTTTCTTTAAAACCTGTGCAGCCTTCAAATCTAACTTTTGAGGGTTATATGGAGCAAAGAAGCATAATTTTGAAGCTTATTTCACAATGGGAGGAAGAGGAATATTCAAGTAAGGAAGAGCCCACTCTAGAGATGGGCGTCTCACAACAAAAGGTTAAGGAGCATCTTCACAGGCAAGTTAAAGAGAAGCTGTATTCATGGCTTCTTCACAAAGCAACTGACAGTGGTAAAGGGCCAAATATCTTAGACAAGAATGGGCAGGGTGTGTTACATTTAGCTTCTGCTCTTGGTTATGACTGGGGCATAAAACCAATTTTAACTGCTGGAGTTAATATCAATTTCCGCGATGTGAATGGTTGGACGGCTCTACATTGGGCTGCATTTTGTGGCAGAGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGCACGGATTCTGGAGCATTGTCAGATCCATCTCCAGCATTTCCTTCAGGCAGAACACCTGCAGATCTTGCATCTAGCAATGGGCACAAAGGAATCTCTGGTTTTCTCGCTGAGTCTTTATTAACAGGCCACCTTGAATCTCTCACAATGGATGATCAACTCAAAGGTGGTAGGCCACAAATTTCAGGATTGAACACAGTGCAGACAGTTTCCGAGCGAACTGCAACACCTGTTTATTATGGTGATATGCCAGATGCCCTTAGTCTCAAGGATTCTCTTACCGCTGTCCGTAATGCTATACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGAAAGCAATTAAATCAGTATGAAGATGATGATGAGCTTGGGTTGGCAGAGCAGCAAGCTCTTTCCCTTATAGCTTCCAAGTCATGCAAATCTGGACAAGGAGATGGTTTAGCCAATGCTGCTGCAACACAAATACAGAAAAAGTTTCGCGGTTGGAAGAAGAGACAAGAGTTCTTGTTCATTCGTCAGAGAATTGTGAAAATCCAGGCCCATGTTAGAGGTCACCAGGTAAGGAAGAAGTATAGAACAATCACCTGGTCTGTGGGAATACTGGAGAAGGTTATATTACGCTGGAGACGCAAGGGCAGTGGTTTACGTGGATTTCGACAAGATGCCCTTCCTAAGGCTCCCAGCCAACAAAGTGATCTTGTGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAGGAAAAGTTCCAAAAGGCCCTTTCAAGGGTGAAGTCCATGGTTCAGTATCCTGAGGCACGGGCTCAATACCGGCGACTGCTGAATGTCGTTGAGGACTTCCGTCAAACCAAGGCATGCAATATAGATATGGTCAATGCTGAAGAGACAGTTGATGGTGTGGAGGAGTTGATTGATATTGATATGCTTTTAGATGATGATGATTTCATTCCTATAGCATTTGATTGA 3207 0.4266 MGDAASSGLGHRLDIQQLQIEAQHRWLRPAEICEILRNYRMFHITPEPHNRPPSGSLFIFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDALHCYYAHGEDNENFQRRSYWMLEPDMMHIVFVHYLEVKGNKTTIGGIKESDDVTSDSRKVTSPSSGFPSNYSSAPSPSTDSMSPTSSLTFSREDADSEDIHQASSGLRPSRESQHMGSGILTDKLNAGFNSSYLLHPISGDHGLSSTSGTEYIPFAPGDKFRGNDTTYIDDQKAHGMASWNNVLEQCTTELHTDPSLISFPSTPSSLVGNILDQEHNFFSDLLAGRSGLTEEAESSQSLQSNWQIHFEDNSGNLPAITQSLSLDFGFEYSTDLLGNETHNVSSEIAPNLFSFHGTQKEQSVQQYYPEQHADGQSQLAKSNSVNKVPGEESINHAFTVKRTLLDRDESLKKVDSFSRWVSKELGEVDDLNMQSSPGISWSTDECGHVIDDASLSPSLSQDQLFSIHDFSPKWAYAESETEVLIIGAFLKSQPEVTTCNWSCMFGEVEVPAEALANGILCCQAPPLKIGRVPFYVTCSNRLACSIYDSSSDLLLHLQLEELLSLKPVQPSNLTFEGYMEQRSIILKLISQWEEEEYSSKEEPTLEMGVSQQKVKEHLHRQVKEKLYSWLLHKATDSGKGPNILDKNGQGVLHLASALGYDWGIKPILTAGVNINFRDVNGWTALHWAAFCGRERTVAVLVSMGTDSGALSDPSPAFPSGRTPADLASSNGHKGISGFLAESLLTGHLESLTMDDQLKGGRPQISGLNTVQTVSERTATPVYYGDMPDALSLKDSLTAVRNAIQAADRIHQVFRMQSFQRKQLNQYEDDDELGLAEQQALSLIASKSCKSGQGDGLANAAATQIQKKFRGWKKRQEFLFIRQRIVKIQAHVRGHQVRKKYRTITWSVGILEKVILRWRRKGSGLRGFRQDALPKAPSQQSDLVKEDDYDFLKEGRKQSEEKFQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKACNIDMVNAEETVDGVEELIDIDMLLDDDDFIPIAFD 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0033 1068 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 1068 - -
Lal3g0033 1068 Gene3D - 641 782 IPR036770 -
Lal3g0033 1068 Pfam IQ calmodulin-binding motif 917 936 IPR000048 GO:0005515
Lal3g0033 1068 Pfam IQ calmodulin-binding motif 894 912 IPR000048 GO:0005515
Lal3g0033 1068 SMART ANK_2a 715 744 IPR002110 GO:0005515
Lal3g0033 1068 SMART ANK_2a 682 711 IPR002110 GO:0005515
Lal3g0033 1068 SMART ANK_2a 754 785 IPR002110 GO:0005515
Lal3g0033 1068 SMART iq_5 914 936 IPR000048 GO:0005515
Lal3g0033 1068 SMART iq_5 891 913 IPR000048 GO:0005515
Lal3g0033 1068 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Lal3g0033 1068 SUPERFAMILY Ankyrin repeat 670 776 IPR036770 -
Lal3g0033 1068 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 7 1068 - -
Lal3g0033 1068 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Lal3g0033 1068 ProSiteProfiles IQ motif profile. 915 939 IPR000048 GO:0005515
Lal3g0033 1068 ProSiteProfiles Ankyrin repeat profile. 682 714 IPR002110 GO:0005515
Lal3g0033 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 942 IPR027417 -
Lal3g0033 1068 Pfam Ankyrin repeats (3 copies) 687 775 IPR002110 GO:0005515
Lal3g0033 1068 Gene3D - 892 940 - -
Lal3g0033 1068 Pfam IPT/TIG domain 502 577 IPR002909 -
Lal3g0033 1068 MobiDBLite consensus disorder prediction 143 214 - -
Lal3g0033 1068 Gene3D Immunoglobulins 495 586 IPR013783 -
Lal3g0033 1068 MobiDBLite consensus disorder prediction 155 189 - -
Lal3g0033 1068 ProSiteProfiles Ankyrin repeat region circular profile. 715 741 - -
Lal3g0033 1068 SUPERFAMILY E set domains 502 579 IPR014756 -
Lal3g0033 1068 SMART CG_1_2 18 136 IPR005559 GO:0003677
Lal3g0033 1068 ProSiteProfiles IQ motif profile. 892 921 IPR000048 GO:0005515
Lal3g0033 1068 ProSiteProfiles Ankyrin repeat profile. 715 747 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0033 Lal-Chr3 191700 201401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0033 1 1049 CAMTA Transcription Factor Family AT5G64220 51.622 0.0 1012
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lal3g0033 CG-1 1.9e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0033 K21596 - gmx:100818124 1611.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0033 3 191700 201401 Lal11g0080 11 528020 537290 LSH