Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0029 ATGGAGAGAGTGACTTCATCTATTATAGGTTCCTTTCTTGTTTGGGCAATTTTGTTTCTTAAGGTTTCTGCCAATGCGGAAGGTGATGCCCTGAATGCATTGAAGAGCAACTTGCTTGATCCTAACGATGTTCTTGATAGCTGGGATGCTACCCTTGTCAATCCCTGCACTTGGTTTCATGTTACATGCAATAGTGACAATAGTGTGACCCGTGTTGATCTTGGAAATGCAGATCTTTCTGGTCAACTGGTTCCACAACTTGGTCAGATCTCAAATTTACAGTACTTGGAACTCTATAGCAATAATATAACTGGAAAAATCCCAGATGAGATTGGGAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAAGTTAACTGGTCCCATACCAAATGCATTGGGCAAGCTTCAAAAACTGCGTTTCCTTTATTCAAATAATCCCGGGTTGGTACCACCAAAAAACACTCCATCTGCTCCACTTTCTCCACCGGCAGCAATGTCTACAGGTAATAGTGCTACTGGAGCTATTGCCGGAGGAGTTGCTGCTGGTGCTGCCCTGCTGTTTGCAGCCCCTGCAATCGCACTTGCATATTGGCGCAGGAGGAAACCTCAGGATCACTTCTTTGACGTTCCTGCTGAGGAGGACCCTGAAGTTCACCTTGGTCAGCTCAAAAGGTTTTCTCTGCGTGAGCTGCAAGTTGCTACAGATAACTTCAGTAATAAAGACATTCTTGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGCTCTCTTGTAGCAGTAAAAAGACTTAAGGAGGAACGTACACAGGGTGGGGAGCTGCAATTTCAAACAGAGGTCGAAATGATCAGCATGGCGGTGCATCGTAATTTGCTTCGCCTCTGTGGTTTTTGCATGACACCTACTGAACGGTTGCTTGTGTATCCTTTCATGGCTAATGGAAGTGTAGCATCATGTTTACGAGACCGTTTTGATGGTAGACCGCCACTCGATTGGCCAATAAGGAAACGTATTGCACTGGGTTCTGCTAGGGGGCTTGCTTATTTACATGAACATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTGTTGGATGAGCAATTTGAAGCAGTTGTTGGGGATTTTGGTTTAGCAAGACTTATGGATTTCAAAGATACTCATGTTACTACTGCTGTACGTGGTACAGTTGGGCATATAGCACCAGAGTACCTCTCAACCGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTAGCTCGTCTTGCCAATGATGACGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTGAAAGACAAGAAGCTGGAAACACTGGTAGATGCAGATTTACAGGGAAATTATGATGATGATGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGCTCCCCCACGGAAAGACCAAAGTTGTCTGAGGTTGTCAGAATGCTAGAAGGTGATGGTTTGGCCGAAAAATGGGAGCAATGGCAGAAAGAGGAGACGGTCCGACAAGATTTTAACCACCTTCATTACTCTAATGCAAATTGGATAGTAGACTCAACTTCAGATATGCAACCAGATGAACTATCAGGTCCTAGATGA 1692 0.4374 MERVTSSIIGSFLVWAILFLKVSANAEGDALNALKSNLLDPNDVLDSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGQLVPQLGQISNLQYLELYSNNITGKIPDEIGNLTNLVSLDLYLNKLTGPIPNALGKLQKLRFLYSNNPGLVPPKNTPSAPLSPPAAMSTGNSATGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKDILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLCGFCMTPTERLLVYPFMANGSVASCLRDRFDGRPPLDWPIRKRIALGSARGLAYLHEHCDPKIIHRDVKAANILLDEQFEAVVGDFGLARLMDFKDTHVTTAVRGTVGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYDDDEVEQLIQVALLCTQGSPTERPKLSEVVRMLEGDGLAEKWEQWQKEETVRQDFNHLHYSNANWIVDSTSDMQPDELSGPR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0029 563 ProSitePatterns Protein kinases ATP-binding region signature. 246 268 IPR017441 GO:0005524
Lal3g0029 563 Gene3D Transferase(Phosphotransferase) domain 1 317 534 - -
Lal3g0029 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 363 375 IPR008271 GO:0004672|GO:0006468
Lal3g0029 563 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 151 - -
Lal3g0029 563 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 150 563 - -
Lal3g0029 563 PANTHER BNAA08G11770D PROTEIN 17 151 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lal3g0029 563 PANTHER BNAA08G11770D PROTEIN 150 563 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lal3g0029 563 SUPERFAMILY Protein kinase-like (PK-like) 219 515 IPR011009 -
Lal3g0029 563 Gene3D Ribonuclease Inhibitor 23 172 IPR032675 -
Lal3g0029 563 Pfam Protein tyrosine and serine/threonine kinase 243 514 IPR001245 GO:0004672|GO:0006468
Lal3g0029 563 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Lal3g0029 563 ProSiteProfiles Protein kinase domain profile. 240 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0029 563 Gene3D Phosphorylase Kinase; domain 1 209 316 - -
Lal3g0029 563 SMART serkin_6 240 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g0029 563 SUPERFAMILY L domain-like 27 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0029 Lal-Chr3 162839 168281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0029 18 563 Receptor kinase-like Gene Family AT4G33430 67.752 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lal3g0029 Pkinase 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0029 K13416 - gmx:100800522 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1824 5 20021846 20027740 Lal3g0029 3 162839 168281 LSH