Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0028 ATGACTACTACTAACCCTAACTTTCTCCAAATCCTTATTTTGATTTCATTCCATTCGGCGCAGTCTACGATCATGGTGAACGTTCCGAAGACGAGGAAGACATATTGCAAGAACAAGGAATGCAAAAAGCACACACTTCACAAGGTTACACAATACAAGAAGGGTAAGGATAGCACTGCTGCTCAAGGTAAGAGACGTTATGATCGTAAACAATCTGGTTATGGTGGTCAGACCAAGCCTGTCTTCCACAAAAAGGCAAAAACCACTAAGAAAATTGTTTTAAGGCTCCAATGCCAGGGTTGCAAGCATGTCTCCCAACGTGCTATCAAGAGGTGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAAGGAACATCTCTGTTTTAA 390 0.4205 MTTTNPNFLQILILISFHSAQSTIMVNVPKTRKTYCKNKECKKHTLHKVTQYKKGKDSTAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQRAIKRCKHFEIGGDKKGKGTSLF 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0028 129 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 16 129 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lal3g0028 129 Pfam Ribosomal protein L44 43 118 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lal3g0028 129 Gene3D - 25 129 - -
Lal3g0028 129 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 16 129 - -
Lal3g0028 129 MobiDBLite consensus disorder prediction 52 86 - -
Lal3g0028 129 ProSitePatterns Ribosomal protein L44e signature. 87 98 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lal3g0028 129 MobiDBLite consensus disorder prediction 52 72 - -
Lal3g0028 129 SUPERFAMILY Zn-binding ribosomal proteins 26 118 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0028 Lal-Chr3 159756 162909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0028 25 129 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 93.333 2.29e-68 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0028 K02929 - han:110877507 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0028 3 159756 162909 Lal11g0067 11 453764 455610 LSH
Lal14g0921 14 11616487 11618114 Lal3g0028 3 159756 162909 PCT
Lal19g0208 19 1903564 1905335 Lal3g0028 3 159756 162909 PCT
Lal3g0028 3 159756 162909 Lal14g0921 14 11616487 11618114 PCT
Lal3g0028 3 159756 162909 Lal19g0208 19 1903564 1905335 PCT