LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal3g0025	ATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGTCCTTGGCTGATATGAGTTGTTTTGTTGATGTCCCGTCTTATGGTTTATATAGTGGTGGTGCTGGTGCAAATGTTGAGGCATATTTTTGTAATTGTTTGCAGGCTGGTTTTGCTGGTGATGATGCTCCTAGGGCTGTGTTCCCCAGTATTATTGGGCGACCTCGTCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATGCTTATGTTGGTGATGAAGCCCAGTCAAAGAGGGGTATCCTCACCTTGAAGTACCCTATAGAGCACGGCATAGTCAGCAACTGGGATGATATGGAAAAGATATGGCATCACACATTCTACAATGAGCTTCGTGTTGCCCCTGAAGAACACCCTGTGCTTCTCACTGAGGCTCCACTCAATCCCAAGGCCAACAGAGAAAAGATGACTCAAATTATGTTTGAGACATTCAATGTGCCTGCTATGTATGTTGCAATTCAGGCTGTCTTATCCCTGTATGCCAGTGGACGTACTACAGGTATTGTGCTCGATTCTGGTGATGGTGTGAGCCACACAGTGCCCATTTATGAAGGTTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCGGGATTTAACGGAATACTTGGTGAAAATCCTTACTGAGAGAGGATACTCCTTCAACACCTCTGCTGAAAAGGAAATTGTCCGTGATGTGAAGGAAAAATTAGCATACGTGGCTCTTGATTTTGAACAAGAAATGGACACTACTAAGAGTAGTTCTGCAGTGGAGAAGAGCTATGAATTGCCTGATGGACAAGTCATTACAATAGGTGCTGAGAGGTTCCGTTGCCCAGAAGTCCTCTTCCAGCCTTCTCTAATTGGTATGGAAGCGCCTGGAATTCATGAAACTACATACAACTCCATCATGAAGTGTGATGTTGACATCAGGAAGGATCTTTATGGAAATATTGTGCTTAGTGGTGGGTCCACTATGTTTCCGGGTATTGCTGATCGTATGAGCAAGGAAATTAGTGCTCTTGCTCCAAGCAGCATGAAAATCAAGGTGGTTGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGGGGTTCTATCTTGGCATCACTTAGCACCTTTCAACAGATGTGGATCTCCAAGGGTGAATATGATGAATCTGGTCCAGCTATTGTTCACCGGAAGTGCTTTTAA	1236	0.449	MADAEDIQPLVVDNGTGMVKSLADMSCFVDVPSYGLYSGGAGANVEAYFCNCLQAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFNTSAEKEIVRDVKEKLAYVALDFEQEMDTTKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal3g0025	411	ProSitePatterns	Actins signature 1.	89	99	IPR004001	-
	Lal3g0025	411	Gene3D	Actin; Chain A, domain 4	216	307	-	-
	Lal3g0025	411	ProSitePatterns	Actins and actin-related proteins signature.	140	152	IPR020902	-
	Lal3g0025	411	ProSitePatterns	Actins signature 2.	392	400	IPR004001	-
	Lal3g0025	411	Gene3D	-	53	405	-	-
	Lal3g0025	411	SUPERFAMILY	Actin-like ATPase domain	183	411	IPR043129	-
	Lal3g0025	411	PANTHER	ACTIN	52	410	IPR004000	-
	Lal3g0025	411	SUPERFAMILY	Actin-like ATPase domain	54	189	IPR043129	-
	Lal3g0025	411	PRINTS	Actin signature	62	71	IPR004000	-
	Lal3g0025	411	PRINTS	Actin signature	85	96	IPR004000	-
	Lal3g0025	411	PRINTS	Actin signature	97	119	IPR004000	-
	Lal3g0025	411	PRINTS	Actin signature	151	164	IPR004000	-
	Lal3g0025	411	PRINTS	Actin signature	176	195	IPR004000	-
	Lal3g0025	411	PRINTS	Actin signature	272	288	IPR004000	-
	Lal3g0025	411	SMART	actin_3	7	411	IPR004000	-
	Lal3g0025	411	Pfam	Actin	52	411	IPR004000	-
	Lal3g0025	411	PANTHER	ACTIN	52	410	-	-
	Lal3g0025	411	CDD	NBD_sugar-kinase_HSP70_actin	110	217	-	-
	Lal3g0025	411	Gene3D	-	174	374	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal3g0025	Lal-Chr3	151254	154225	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal3g0025	1	411	Cytoskeleton Gene Families	AT5G09810	86.861	0.0	732

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal3g0025	K10355		-	gmx:100778206	731.48