Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0022 ATGTCATTCCGCAGCATAGTTCGTGACTTGAGGGGTAGTTTTGGGAGTTTATCTATGCGGAGTTTTGATATCAGATTGAGTGGTCATCATAGAGGAAAATCTCATGGATCGGTACAGGATTTGCATGACCAGCCTCTAGTAATTCAAACTAGCCGATGGGCAAGCTTACCCCCGGAATTATTATATGATGTCATTAGACGACTAGAAGAGAGTGAGAATACATGGCCTTCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGAAATCGTTAAAAGCCCGGAGCTCAGCGGAAAACTTACATTCCCTGTGTCCCTGAAGCAGCCTGGGCCACGGGATGGAATGATTCAATGTTTTATCAAAAGAGATAAATCAAATCTAACGTACCATCTGTTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGTAAGTTCCTCCTTTCTGCTAAGAGGACAAGGAGAACAACATACACAGAGTATGTTATTTCAATGGATGCTGACAACATCTCTAGATCAAGCAACACTTACATTGGAAAGCTGCGATCAAACTTTCTTGGTACAAAGTTCATTATATATGATACACAGCCTCCATACTCTTCTGCCCACATATGCCCCCCTGGGACTGGGAGGACGAGCCGCAGATTTTATTCCAAAAAGGTGTCACCAAAGGTCCCACCTGGGAGCTACAACATAGCTCAGGTAACGTATGAGTTAAATGTGCTCGGGACACGGGGCCCAAGGAAGATGCACTGCATCATGCATTCAATACCAGCCTCAGCACTCGATGCAGGTGGCACTGTTCCTGGTCAGGCTGAGCTTCTTCCACGTTCCCTGGAGGACTCATTTCGCAGCATCTCCTTCTCGAAGTCCCTTGACCATTCCATTGACTTCAGCAGCGCTCGATTTTCTGAGATTGGAGGATCATGTAATGAGGACGACGATGAAAAGATGAGACCCTTGGTTCTAAAGAACAAGCCTCCAAGATGGCATGAACAATTGCAATGTTGGTGCCTTAATTTCCGTGGAAGGGTGACTGTTGCATCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCGGCTGCTGGTGCACCAACACCGTCTCAACCAGCAGCGCCACCAGAGCATGATAAGATTATTCTGCAGTTTGGTAAAGTTGGGAAAGATATGTTCACCATGGATTATAGGTATCCTTTATCCGCATTCCAGGCTTTTGCGATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1287 0.4553 MSFRSIVRDLRGSFGSLSMRSFDIRLSGHHRGKSHGSVQDLHDQPLVIQTSRWASLPPELLYDVIRRLEESENTWPSRKHVVACAAVCQSWRNMCKEIVKSPELSGKLTFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGRTSRRFYSKKVSPKVPPGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPASALDAGGTVPGQAELLPRSLEDSFRSISFSKSLDHSIDFSSARFSEIGGSCNEDDDEKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0022 428 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Lal3g0022 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Lal3g0022 428 Pfam Tub family 114 423 IPR000007 -
Lal3g0022 428 Gene3D - 48 104 - -
Lal3g0022 428 Gene3D Tubby Protein; Chain A 112 422 IPR025659 -
Lal3g0022 428 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lal3g0022 428 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lal3g0022 428 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Lal3g0022 428 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Lal3g0022 428 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Lal3g0022 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Lal3g0022 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Lal3g0022 428 SUPERFAMILY Tubby C-terminal domain-like 102 428 IPR025659 -
Lal3g0022 428 PANTHER TUBBY-RELATED 1 428 - -
Lal3g0022 428 Pfam F-box domain 53 100 IPR001810 GO:0005515
Lal3g0022 428 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Lal3g0022 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0022 Lal-Chr3 138807 145049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0022 1 428 TUB Transcription Factor Family AT1G76900 69.892 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal3g0022 Tub 8.1e-118 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1839 5 20088893 20092927 Lal3g0022 3 138807 145049 LSH